| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is ywbO [H]
Identifier: 110679956
GI number: 110679956
Start: 2614265
End: 2614906
Strand: Direct
Name: ywbO [H]
Synonym: RD1_2744
Alternate gene names: 110679956
Gene position: 2614265-2614906 (Clockwise)
Preceding gene: 110679955
Following gene: 110679957
Centisome position: 63.25
GC content: 57.94
Gene sequence:
>642_bases ATGACCGAAAAGACCAAGATTGACATCATATCAGACCCGATCTGCCCGTGGTGCTATATCGGCAAGACGAATCTGGACCG CGCATTGGCGGAAAATCCGGATCACCCTTTCCTGATTGAATGGCATCCCTTTCAACTCAACCCGGAAATGCCAGCAGACG GCATGGACCGGCGCGCCTATCTCGAAGGAAAATTCGGCGGCAAGGAAGGTGCTGTGCGCGCTTATGCACCTGTCGTTGAA CATGCCAAAGCCGCCGGGTTGGAGATCGACTTCGAAGCGATGAAGCGCACCCCGAACACCATAGATGCACACCGATTGAT TCACTGGGCCGGGATCGAGGGGTGCCAGACGGCCGCCGTGTCGGCCCTGTTCAAGGCCTATTTTGAAGAAGGCCGCGACA TCGGCGACACCGAGGTTCTTGCCGACATTGCCGACAGCATCGGCATGGACGCGGCGGTGGTTGGCAGGCTTTTGAAATCC GATGCGGACATCGAGGACATCAAAGCGCGCGATGCGCATAGTCGCAGCATGGGTGTGACATCGGTGCCGACCTTTGTCGT TGCGGGCAAACATGCGGTGCCCGGTGCGCAGCCTGCAGAGCTCTGGCGCAAGGTGATCGAAGAGGTCTCTACGAATAGCT GA
Upstream 100 bases:
>100_bases TACAAACAGCCGCGCGTGTTCGAACACCTGCCGGACCTGCCCATGGGCGCAAATGGCAAAATCCTGCGCCGTGTTCTGCG CCAACGCTTTGAGAGGCACC
Downstream 100 bases:
>100_bases CGGTAATGTGCAAAAATGCGACAATGCCACACCAAGTGGCGATTGAAGAGGGTTCAACTCTAGGTTATGTCTGACGCCAA GTAGCGCCAAATTATGAACG
Product: DSBA-like thioredoxin domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MTEKTKIDIISDPICPWCYIGKTNLDRALAENPDHPFLIEWHPFQLNPEMPADGMDRRAYLEGKFGGKEGAVRAYAPVVE HAKAAGLEIDFEAMKRTPNTIDAHRLIHWAGIEGCQTAAVSALFKAYFEEGRDIGDTEVLADIADSIGMDAAVVGRLLKS DADIEDIKARDAHSRSMGVTSVPTFVVAGKHAVPGAQPAELWRKVIEEVSTNS
Sequences:
>Translated_213_residues MTEKTKIDIISDPICPWCYIGKTNLDRALAENPDHPFLIEWHPFQLNPEMPADGMDRRAYLEGKFGGKEGAVRAYAPVVE HAKAAGLEIDFEAMKRTPNTIDAHRLIHWAGIEGCQTAAVSALFKAYFEEGRDIGDTEVLADIADSIGMDAAVVGRLLKS DADIEDIKARDAHSRSMGVTSVPTFVVAGKHAVPGAQPAELWRKVIEEVSTNS >Mature_212_residues TEKTKIDIISDPICPWCYIGKTNLDRALAENPDHPFLIEWHPFQLNPEMPADGMDRRAYLEGKFGGKEGAVRAYAPVVEH AKAAGLEIDFEAMKRTPNTIDAHRLIHWAGIEGCQTAAVSALFKAYFEEGRDIGDTEVLADIADSIGMDAAVVGRLLKSD ADIEDIKARDAHSRSMGVTSVPTFVVAGKHAVPGAQPAELWRKVIEEVSTNS
Specific function: Unknown
COG id: COG2761
COG function: function code Q; Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001853 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF01323 DSBA [H]
EC number: NA
Molecular weight: Translated: 23285; Mature: 23153
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEKTKIDIISDPICPWCYIGKTNLDRALAENPDHPFLIEWHPFQLNPEMPADGMDRRAY CCCCCEEEEECCCCCCEEEECCCCHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCEEE LEGKFGGKEGAVRAYAPVVEHAKAAGLEIDFEAMKRTPNTIDAHRLIHWAGIEGCQTAAV ECCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCHHHHHHHHHCCCHHHHHHH SALFKAYFEEGRDIGDTEVLADIADSIGMDAAVVGRLLKSDADIEDIKARDAHSRSMGVT HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC SVPTFVVAGKHAVPGAQPAELWRKVIEEVSTNS CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure TEKTKIDIISDPICPWCYIGKTNLDRALAENPDHPFLIEWHPFQLNPEMPADGMDRRAY CCCCEEEEECCCCCCEEEECCCCHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCEEE LEGKFGGKEGAVRAYAPVVEHAKAAGLEIDFEAMKRTPNTIDAHRLIHWAGIEGCQTAAV ECCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCHHHHHHHHHCCCHHHHHHH SALFKAYFEEGRDIGDTEVLADIADSIGMDAAVVGRLLKSDADIEDIKARDAHSRSMGVT HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC SVPTFVVAGKHAVPGAQPAELWRKVIEEVSTNS CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]