| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is pstS [H]
Identifier: 110679869
GI number: 110679869
Start: 2522268
End: 2523308
Strand: Direct
Name: pstS [H]
Synonym: RD1_2642
Alternate gene names: 110679869
Gene position: 2522268-2523308 (Clockwise)
Preceding gene: 110679868
Following gene: 110679870
Centisome position: 61.03
GC content: 58.6
Gene sequence:
>1041_bases ATGACGTTTGTAAAAATATCTTCCTCCGCGCTGGCGATTGCCGTCGTTGCCGCAACATCTGCTACGGCGCGCGATCAGGT GCAGGTTGCCGGATCATCCACGGTTTTGCCCTATGCCGCCATTGTGGCTGAAGCATTCGGCGAAAACTTCGAGTTTCCGA CGCCCGTCGTTGAGTCCGGGGGATCCTCGGCGGGTCTCAAGCGCTTTTGTGAGGGCGTTGGCGAAAATACAGTCGATATC GCCAACTCGTCCCGTCCCATTCGCGAGCGCGAAATCGCGGCCTGCGCCGAAAACGGTGTGACGGACATCATCGAAGTGCG CATCGGTTATGACGGGATCGTCTTTGCCAGCCAGCAGACCGGCCCTGCCTTTACCGAATTCCAGCCTTCGGACTGGTACA CGGCACTGGCCGCAAACCTGCCGGTTGACGGTGAGATGGTCGCGAACCCAAACATGACATGGGACGCAGTCAACCCGGCG CTGCCAGCGGTGGATATCGCGGCCTTCATTCCCGGCACCAAACACGGCACCCGCGAAGTATTCGAGGAAAAGGTTCTGCT GCAGGGCTGCGAGGATACAGGTGCGATGCAAGCCATGATGGACATGGGCATGGATGAAGACGCGGCCGAAAGCGCCTGCA TGGCCGTGCGCACAGACGGCAAATCAGTGGATATCGACGGTGATTACACCGAGACTCTGGCGCGGATCGAAAGCAATGCC AACGGCATCGGCGTTTTCGGGCTGGCGTTTTATGAAAACAACACCGACAAGCTGAAAGTGGCCACCATGGGTGGTGTGGA GCCGACGACAGAGACGATTTCGACCGGTGAATACCCCGTGTCGCGTCCGCTGTTCTTTTACATCAAGAAGGCGCACATCG GTGTGATCCCGGGACTGAAGGACTTTGCCGAGTTTTTCGTTTCCGACGACATTGCGGGGCCGGATGGTCCGTTGGCTGAA TATGGTCTGGTGTCCGATCCGGCGCTGGCCGAGACACAGGCCGCTGTCGCAGATGAAGACGTGTTGGGCAGCAACTCCTG A
Upstream 100 bases:
>100_bases TTACAAAACTGTCACAAAAGGATAGCGTCCAATCCTTAGCTATCCGGCAAGCGGTTGTGCATACGGTCATCCGCAGATTC GTTTCATGACAGGAGCTATC
Downstream 100 bases:
>100_bases CCTGAACAGAGACAAAAGCGGCGAAAGGCGGCAATTTCCTGCGGCCTTTCGCTTTACTTGAAGTGGCATGCGAAAAGGTT GGGTGCATGACGATCGGGCT
Product: phosphate ABC transporter, periplasmic phosphate-binding protein
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MTFVKISSSALAIAVVAATSATARDQVQVAGSSTVLPYAAIVAEAFGENFEFPTPVVESGGSSAGLKRFCEGVGENTVDI ANSSRPIREREIAACAENGVTDIIEVRIGYDGIVFASQQTGPAFTEFQPSDWYTALAANLPVDGEMVANPNMTWDAVNPA LPAVDIAAFIPGTKHGTREVFEEKVLLQGCEDTGAMQAMMDMGMDEDAAESACMAVRTDGKSVDIDGDYTETLARIESNA NGIGVFGLAFYENNTDKLKVATMGGVEPTTETISTGEYPVSRPLFFYIKKAHIGVIPGLKDFAEFFVSDDIAGPDGPLAE YGLVSDPALAETQAAVADEDVLGSNS
Sequences:
>Translated_346_residues MTFVKISSSALAIAVVAATSATARDQVQVAGSSTVLPYAAIVAEAFGENFEFPTPVVESGGSSAGLKRFCEGVGENTVDI ANSSRPIREREIAACAENGVTDIIEVRIGYDGIVFASQQTGPAFTEFQPSDWYTALAANLPVDGEMVANPNMTWDAVNPA LPAVDIAAFIPGTKHGTREVFEEKVLLQGCEDTGAMQAMMDMGMDEDAAESACMAVRTDGKSVDIDGDYTETLARIESNA NGIGVFGLAFYENNTDKLKVATMGGVEPTTETISTGEYPVSRPLFFYIKKAHIGVIPGLKDFAEFFVSDDIAGPDGPLAE YGLVSDPALAETQAAVADEDVLGSNS >Mature_345_residues TFVKISSSALAIAVVAATSATARDQVQVAGSSTVLPYAAIVAEAFGENFEFPTPVVESGGSSAGLKRFCEGVGENTVDIA NSSRPIREREIAACAENGVTDIIEVRIGYDGIVFASQQTGPAFTEFQPSDWYTALAANLPVDGEMVANPNMTWDAVNPAL PAVDIAAFIPGTKHGTREVFEEKVLLQGCEDTGAMQAMMDMGMDEDAAESACMAVRTDGKSVDIDGDYTETLARIESNAN GIGVFGLAFYENNTDKLKVATMGGVEPTTETISTGEYPVSRPLFFYIKKAHIGVIPGLKDFAEFFVSDDIAGPDGPLAEY GLVSDPALAETQAAVADEDVLGSNS
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36386; Mature: 36255
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFVKISSSALAIAVVAATSATARDQVQVAGSSTVLPYAAIVAEAFGENFEFPTPVVESG CEEEEECCCCEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHCC GSSAGLKRFCEGVGENTVDIANSSRPIREREIAACAENGVTDIIEVRIGYDGIVFASQQT CCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCC GPAFTEFQPSDWYTALAANLPVDGEMVANPNMTWDAVNPALPAVDIAAFIPGTKHGTREV CCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHH FEEKVLLQGCEDTGAMQAMMDMGMDEDAAESACMAVRTDGKSVDIDGDYTETLARIESNA HHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHEEEEECCCCEEECCCCHHHHHHHHHCCC NGIGVFGLAFYENNTDKLKVATMGGVEPTTETISTGEYPVSRPLFFYIKKAHIGVIPGLK CCEEEEEEEEEECCCCEEEEEEECCCCCCCHHCCCCCCCCCCCEEEEEEECCEECCCCHH DFAEFFVSDDIAGPDGPLAEYGLVSDPALAETQAAVADEDVLGSNS HHHHHHHCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TFVKISSSALAIAVVAATSATARDQVQVAGSSTVLPYAAIVAEAFGENFEFPTPVVESG EEEEECCCCEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHCC GSSAGLKRFCEGVGENTVDIANSSRPIREREIAACAENGVTDIIEVRIGYDGIVFASQQT CCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCC GPAFTEFQPSDWYTALAANLPVDGEMVANPNMTWDAVNPALPAVDIAAFIPGTKHGTREV CCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHH FEEKVLLQGCEDTGAMQAMMDMGMDEDAAESACMAVRTDGKSVDIDGDYTETLARIESNA HHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHEEEEECCCCEEECCCCHHHHHHHHHCCC NGIGVFGLAFYENNTDKLKVATMGGVEPTTETISTGEYPVSRPLFFYIKKAHIGVIPGLK CCEEEEEEEEEECCCCEEEEEEECCCCCCCHHCCCCCCCCCCCEEEEEEECCEECCCCHH DFAEFFVSDDIAGPDGPLAEYGLVSDPALAETQAAVADEDVLGSNS HHHHHHHCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA