| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is pstC [H]
Identifier: 110679870
GI number: 110679870
Start: 2523371
End: 2524882
Strand: Direct
Name: pstC [H]
Synonym: RD1_2643
Alternate gene names: 110679870
Gene position: 2523371-2524882 (Clockwise)
Preceding gene: 110679869
Following gene: 110679871
Centisome position: 61.05
GC content: 59.66
Gene sequence:
>1512_bases GTGGCATGCGAAAAGGTTGGGTGCATGACGATCGGGCTTACGGGATTTATTGTTCTGGCCATTCTGGCCCTGACAATCGC TTCCTTCATGATGGCAAAGACGCGCGCGACGTCCGCCGCGGGGGGCGACATCCGGCTTTTGCATTCCTTGCCGAATTACT ACGGCTACAACGCTGCGATGTTTGCGGCTGTTCCCGCCTTTGGCATGTTGGTCATCTGGCTGCTGGCGCAGCCGATGATG ATCGAAAACACGGTCTATAACCTGCTGCCGGAGAGTATCATCGCCGAAGGTTCGAGCCGGAGCCTCGTCATGAGTGATGT GCGCCGGGTGGCCGAAGGGCTTGATATCGCCGTGGCGGCCGGCGCCTTGACGAAAGATGAAGCCGATCAGATCACCACCG GTACGGCCGACATCCGCGCCATACTCGGCGGTGTCGGCGTCGCGCTCGGATCAGATGTTGCGCCCGAGGTTTTGGCCGCA GCACAGCAGTATCGCGACAAATCCTCTACCGGGTCGGCCTGGATGGCAGTGATTGTCCTTGCTGCCGCCCTGGTGGGGGC CGCCGCGAGCATTTTTGCCAGCAAGGCCGATTTCAGGGCGCGAAACGTCGTCGAACGCTTTGCGCTCGGGATGTTGATGC TTGCGGCATCGCTCGCGATTCTGACCACGGTGGGGATCGTCCTGTCGATGCTGTTTGAGAGCATGAATTTCTTTCGCATG CACCCGTGGACGGATTTCTTTTTCGGCGGCACGTGGGCGCCGAATTTCCGGGGTGACAGCGATCTTTCCATCCTGCCGCT GCTCTGGGGGACGCTGTATATCTCGATTGTTGCCTTGCTGGTTGCGGTGCCGATCGGGCTTTTTGCGGCGATTTACCTGT CAGAATATGCAAGTCCGCGCGTGCGCTCCTTTGCCAAGCCGCTGCTCGAAATCCTCGCCGGTATTCCTACGATTGTGTAC GGCCTCTTTGCGCTGCTGACGGTCGGGCCGTTTCTGGTGAGCATCTTTGGACGCGGGGATGCGGGCCTGCTCGGTGTCGA ATGGATGAGCGGCGCAACGGCTGTGCTGACTGCGGGGCTGGTCATGGGGATCATGCTGATCCCTTTCGTGTCGTCCCTTT CAGATGATATCATCAACGCGGTGCCGCAGGCATTGCGCGACGGCTCATTGGGGTTGGGGTCCACAAAATCCGAAACGATC CGTCAGGTCGTTCTGCCCGCAGCCTTGCCCGGCATCGTTGGCGCGGTTCTTTTGGCGGCGTCCCGCGCGATTGGCGAAAC GATGATCGTCGTGCTGGGGGCAGGGGCCATCGCCAAATTCTCGCTCAACCCGCTGGATGCAATGACGACCATTACCACAC GGATCGTCAGCCAGTTGACCGGTGACACGGATTTTGCCAGCGCGGAAACCCTTGTCGCCTTTGCCCTTGGCCTCACCCTC TTTGTGCTGACCTTGGGCTTGAATGTGATCGCGCTCTATATCGTGCGCAGATATCGGGAGCAGTACGAATGA
Upstream 100 bases:
>100_bases CTGTCGCAGATGAAGACGTGTTGGGCAGCAACTCCTGACCTGAACAGAGACAAAAGCGGCGAAAGGCGGCAATTTCCTGC GGCCTTTCGCTTTACTTGAA
Downstream 100 bases:
>100_bases GCGACGCGACAACCACTGCAATACCATCCAGTCCCTCCGCCCCACCACGCAAAGGATCGCTGCTGACGCAGGATGCGCGC ACCAAAAAGCGCAACGCGGC
Product: phosphate ABC transporter, permease protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MACEKVGCMTIGLTGFIVLAILALTIASFMMAKTRATSAAGGDIRLLHSLPNYYGYNAAMFAAVPAFGMLVIWLLAQPMM IENTVYNLLPESIIAEGSSRSLVMSDVRRVAEGLDIAVAAGALTKDEADQITTGTADIRAILGGVGVALGSDVAPEVLAA AQQYRDKSSTGSAWMAVIVLAAALVGAAASIFASKADFRARNVVERFALGMLMLAASLAILTTVGIVLSMLFESMNFFRM HPWTDFFFGGTWAPNFRGDSDLSILPLLWGTLYISIVALLVAVPIGLFAAIYLSEYASPRVRSFAKPLLEILAGIPTIVY GLFALLTVGPFLVSIFGRGDAGLLGVEWMSGATAVLTAGLVMGIMLIPFVSSLSDDIINAVPQALRDGSLGLGSTKSETI RQVVLPAALPGIVGAVLLAASRAIGETMIVVLGAGAIAKFSLNPLDAMTTITTRIVSQLTGDTDFASAETLVAFALGLTL FVLTLGLNVIALYIVRRYREQYE
Sequences:
>Translated_503_residues MACEKVGCMTIGLTGFIVLAILALTIASFMMAKTRATSAAGGDIRLLHSLPNYYGYNAAMFAAVPAFGMLVIWLLAQPMM IENTVYNLLPESIIAEGSSRSLVMSDVRRVAEGLDIAVAAGALTKDEADQITTGTADIRAILGGVGVALGSDVAPEVLAA AQQYRDKSSTGSAWMAVIVLAAALVGAAASIFASKADFRARNVVERFALGMLMLAASLAILTTVGIVLSMLFESMNFFRM HPWTDFFFGGTWAPNFRGDSDLSILPLLWGTLYISIVALLVAVPIGLFAAIYLSEYASPRVRSFAKPLLEILAGIPTIVY GLFALLTVGPFLVSIFGRGDAGLLGVEWMSGATAVLTAGLVMGIMLIPFVSSLSDDIINAVPQALRDGSLGLGSTKSETI RQVVLPAALPGIVGAVLLAASRAIGETMIVVLGAGAIAKFSLNPLDAMTTITTRIVSQLTGDTDFASAETLVAFALGLTL FVLTLGLNVIALYIVRRYREQYE >Mature_502_residues ACEKVGCMTIGLTGFIVLAILALTIASFMMAKTRATSAAGGDIRLLHSLPNYYGYNAAMFAAVPAFGMLVIWLLAQPMMI ENTVYNLLPESIIAEGSSRSLVMSDVRRVAEGLDIAVAAGALTKDEADQITTGTADIRAILGGVGVALGSDVAPEVLAAA QQYRDKSSTGSAWMAVIVLAAALVGAAASIFASKADFRARNVVERFALGMLMLAASLAILTTVGIVLSMLFESMNFFRMH PWTDFFFGGTWAPNFRGDSDLSILPLLWGTLYISIVALLVAVPIGLFAAIYLSEYASPRVRSFAKPLLEILAGIPTIVYG LFALLTVGPFLVSIFGRGDAGLLGVEWMSGATAVLTAGLVMGIMLIPFVSSLSDDIINAVPQALRDGSLGLGSTKSETIR QVVLPAALPGIVGAVLLAASRAIGETMIVVLGAGAIAKFSLNPLDAMTTITTRIVSQLTGDTDFASAETLVAFALGLTLF VLTLGLNVIALYIVRRYREQYE
Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0573
COG function: function code P; ABC-type phosphate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790164, Length=294, Percent_Identity=29.5918367346939, Blast_Score=105, Evalue=9e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011864 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 52898; Mature: 52767
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACEKVGCMTIGLTGFIVLAILALTIASFMMAKTRATSAAGGDIRLLHSLPNYYGYNAAM CCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHCCCCHHH FAAVPAFGMLVIWLLAQPMMIENTVYNLLPESIIAEGSSRSLVMSDVRRVAEGLDIAVAA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH GALTKDEADQITTGTADIRAILGGVGVALGSDVAPEVLAAAQQYRDKSSTGSAWMAVIVL CCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH AAALVGAAASIFASKADFRARNVVERFALGMLMLAASLAILTTVGIVLSMLFESMNFFRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE HPWTDFFFGGTWAPNFRGDSDLSILPLLWGTLYISIVALLVAVPIGLFAAIYLSEYASPR CCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VRSFAKPLLEILAGIPTIVYGLFALLTVGPFLVSIFGRGDAGLLGVEWMSGATAVLTAGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHH VMGIMLIPFVSSLSDDIINAVPQALRDGSLGLGSTKSETIRQVVLPAALPGIVGAVLLAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SRAIGETMIVVLGAGAIAKFSLNPLDAMTTITTRIVSQLTGDTDFASAETLVAFALGLTL HHHHHHHHHHEECCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH FVLTLGLNVIALYIVRRYREQYE HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ACEKVGCMTIGLTGFIVLAILALTIASFMMAKTRATSAAGGDIRLLHSLPNYYGYNAAM CCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHCCCCHHH FAAVPAFGMLVIWLLAQPMMIENTVYNLLPESIIAEGSSRSLVMSDVRRVAEGLDIAVAA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH GALTKDEADQITTGTADIRAILGGVGVALGSDVAPEVLAAAQQYRDKSSTGSAWMAVIVL CCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH AAALVGAAASIFASKADFRARNVVERFALGMLMLAASLAILTTVGIVLSMLFESMNFFRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE HPWTDFFFGGTWAPNFRGDSDLSILPLLWGTLYISIVALLVAVPIGLFAAIYLSEYASPR CCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VRSFAKPLLEILAGIPTIVYGLFALLTVGPFLVSIFGRGDAGLLGVEWMSGATAVLTAGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHH VMGIMLIPFVSSLSDDIINAVPQALRDGSLGLGSTKSETIRQVVLPAALPGIVGAVLLAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SRAIGETMIVVLGAGAIAKFSLNPLDAMTTITTRIVSQLTGDTDFASAETLVAFALGLTL HHHHHHHHHHEECCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH FVLTLGLNVIALYIVRRYREQYE HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]