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The map label for this gene is rpoE [H]

Identifier: 110679707

GI number: 110679707

Start: 2348777

End: 2349601

Strand: Reverse

Name: rpoE [H]

Synonym: RD1_2462

Alternate gene names: 110679707

Gene position: 2349601-2348777 (Counterclockwise)

Preceding gene: 110679709

Following gene: 110679706

Centisome position: 56.85

GC content: 54.79

Gene sequence:

>825_bases
ATGGCATCGACATCTCCAACTTTTTTTGAATTCTATGGGAACCAAACGCACCGGACGCGCGTTTGGTTCCCATGTGCACA
TCAAATTTTTCGAAAGGATCCCACTTATGGCTCGGGACGATCAGGCAGGCAAGACCTCCGAATTCATAGACAAGAACCTG
AAGCAGATCTTTCAACAAGAAATAGAGCGCGACATTCCAGACCGGTTCACCAATCTGATCGAACAGTTACGCGCAAAAGA
TGCATCAACCGACAACAGCAGCGGCGGCAAAAAAGTATGACAGATCCCAGAGACGAGATCGTTGAGCACCTCAGAACGCT
GCGGGCCTTCGCGCTCAGCCTGACGCGGAACACGGCGATGGCAGATGATATGGTGCAGGATACGATCGAAAAGGCCTGGC
GCAACATCGATAAGTTCGAGGCAGGCACCAACATGCGCGCGTGGCTTTTCACCATTCTGCGCAACACCTATTATTCCAAC
CGTCGCCGCGCCAAGCGCGAGGTCGCTGACCCGGAAGGTGCAATGGTTGAACAATTGTCTGAGAAGCCCGCACATGACGG
GCGTCTGCACATGACGGATTTTCGCGCCGCATTCACGCAACTGCCCGATGAACAACGCGAGGTTCTGTTACTTGTGGGGG
CCTCTGGCTTTTCCTACGAGGAAGCAGCAGAAATGTGCGGCGTCGCTGTCGGTACGATAAAAAGCCGCGTGAACCGTGGC
CGCAAACGGCTGGCGGAACTGATGGATGTCAATGAGGATCAACCCATGGAGCTTACGGACGCCCACACGGTCGCAGTTGT
CGCGGCGGGTGTGACGGCTGCATGA

Upstream 100 bases:

>100_bases
TCACCTGTCTCCTGACTGCCCGTCAGCGCACGCGCATAACGGCGAAGATAGGGAAGTTGCTGGCCCACCTTCTCGGCAAG
ATCATCGGCAGTTGCTTCGT

Downstream 100 bases:

>100_bases
GGTAAATGCGTGCGCCTGAAGAACCGTTTTTCCCGGCTGGGGCTTGCCGCACGCGCCATGGCTTTTGTGACGCTTGCACT
GCTGCCTCTGGGGCTTATCG

Product: RNA polymerase sigma factor, putative

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MASTSPTFFEFYGNQTHRTRVWFPCAHQIFRKDPTYGSGRSGRQDLRIHRQEPEADLSTRNRARHSRPVHQSDRTVTRKR
CINRQQQRRQKSMTDPRDEIVEHLRTLRAFALSLTRNTAMADDMVQDTIEKAWRNIDKFEAGTNMRAWLFTILRNTYYSN
RRRAKREVADPEGAMVEQLSEKPAHDGRLHMTDFRAAFTQLPDEQREVLLLVGASGFSYEEAAEMCGVAVGTIKSRVNRG
RKRLAELMDVNEDQPMELTDAHTVAVVAAGVTAA

Sequences:

>Translated_274_residues
MASTSPTFFEFYGNQTHRTRVWFPCAHQIFRKDPTYGSGRSGRQDLRIHRQEPEADLSTRNRARHSRPVHQSDRTVTRKR
CINRQQQRRQKSMTDPRDEIVEHLRTLRAFALSLTRNTAMADDMVQDTIEKAWRNIDKFEAGTNMRAWLFTILRNTYYSN
RRRAKREVADPEGAMVEQLSEKPAHDGRLHMTDFRAAFTQLPDEQREVLLLVGASGFSYEEAAEMCGVAVGTIKSRVNRG
RKRLAELMDVNEDQPMELTDAHTVAVVAAGVTAA
>Mature_273_residues
ASTSPTFFEFYGNQTHRTRVWFPCAHQIFRKDPTYGSGRSGRQDLRIHRQEPEADLSTRNRARHSRPVHQSDRTVTRKRC
INRQQQRRQKSMTDPRDEIVEHLRTLRAFALSLTRNTAMADDMVQDTIEKAWRNIDKFEAGTNMRAWLFTILRNTYYSNR
RRAKREVADPEGAMVEQLSEKPAHDGRLHMTDFRAAFTQLPDEQREVLLLVGASGFSYEEAAEMCGVAVGTIKSRVNRGR
KRLAELMDVNEDQPMELTDAHTVAVVAAGVTAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 31493; Mature: 31362

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTSPTFFEFYGNQTHRTRVWFPCAHQIFRKDPTYGSGRSGRQDLRIHRQEPEADLSTR
CCCCCCCHHHHCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
NRARHSRPVHQSDRTVTRKRCINRQQQRRQKSMTDPRDEIVEHLRTLRAFALSLTRNTAM
HHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ADDMVQDTIEKAWRNIDKFEAGTNMRAWLFTILRNTYYSNRRRAKREVADPEGAMVEQLS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EKPAHDGRLHMTDFRAAFTQLPDEQREVLLLVGASGFSYEEAAEMCGVAVGTIKSRVNRG
HCCCCCCCEEHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
RKRLAELMDVNEDQPMELTDAHTVAVVAAGVTAA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ASTSPTFFEFYGNQTHRTRVWFPCAHQIFRKDPTYGSGRSGRQDLRIHRQEPEADLSTR
CCCCCCHHHHCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
NRARHSRPVHQSDRTVTRKRCINRQQQRRQKSMTDPRDEIVEHLRTLRAFALSLTRNTAM
HHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ADDMVQDTIEKAWRNIDKFEAGTNMRAWLFTILRNTYYSNRRRAKREVADPEGAMVEQLS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EKPAHDGRLHMTDFRAAFTQLPDEQREVLLLVGASGFSYEEAAEMCGVAVGTIKSRVNRG
HCCCCCCCEEHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
RKRLAELMDVNEDQPMELTDAHTVAVVAAGVTAA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]