Click here to switch to the map view.

The map label for this gene is 110679706

Identifier: 110679706

GI number: 110679706

Start: 2347022

End: 2348140

Strand: Reverse

Name: 110679706

Synonym: RD1_2461

Alternate gene names: NA

Gene position: 2348140-2347022 (Counterclockwise)

Preceding gene: 110679707

Following gene: 110679703

Centisome position: 56.81

GC content: 54.42

Gene sequence:

>1119_bases
GTGTTGGCAACAGCGCGAGATTCCCTGCCCGACAATGTGGATCTGCAAGACCTCATCGCCGACGATCCATACACTTTCAC
GGCCGTATCGGCGAACGAGATCGAACGCACCTATGCTTTCGTCCCCCTGACGGCAGGAAACGCCTATGCCTTGGGAACAT
GGAATACGGATGCTGCGTTGTTGCAGGGTGAGGCAGGATACTGGCGCACCATCATACTCGCCGCACTTATGTGGCTGGGC
AGCGTGCTGGTTATTTTTCTGATCATGCAATTACTGGTGATCCGCGGGATCAAGCGCCTCCGAACGCAGGTGCGCAGCTT
TCGGGATACGCGGACAATTCCTGCCGGCGAAATCGTGGCGAAGGGCGAACTCTACGATCTGGAAGTTGATATCGTCGCCA
TGGCCGAAACGATTGTGCGGGACGAAGCCGAGCTGGAAGACGCCGTGCATGAAAAGAATGTTCTCTTGAAAGAGGTACAC
CACCGGGTAAAAAACAATCTACAACTTATCAATTCCATCATCAACATGATCCTGAGGGGGGCAAAAAGCCCCGAAACACG
TACTGTTGTAAAACGGCTGCAGGATCGGGTCATGGCGCTCGCCTCGGTCCACCGCACAATTTATCAGGCACAGTCAATGG
ACCGGGTGGATGCGTCTGAAATCGTCCGGGAGATTGTAAATCAAGGGGTGGCAATCGGTTTGCCGCGCGGGTCCGATGTC
GACATCAGATGCAATCTATCCCCTGTCTCGCTCTACCCTGATCAGGCCATGCCATTGTCCTTGCTCGTTTCAGAGGCAAT
CACCAATGCGTTGAAATACGTGGGCGGTGACAATGCATTTATCGCGGTCGATTTATCGACAACCTCAACGGATGACGAGG
ATGGCACCAGCAGACACACGGCCACCCTGAGGATTGCGAACACCGTTGGCGACACGGTGGATGATGATGAAGGGACCGGA
CTTGGATCGCAGCTCTTGCGCGCCTTCACGCACCAGTTGGATGGCGAAGCCGTAACCTCAAATCACAGCGGCCTCTATTC
ATTCAGCACAACCTTCAACATCAGCGCTTTCAATCCTGAAGAGAGTGATTTCGTCGAGAAGCGCGCCGAAGAGGACTGA

Upstream 100 bases:

>100_bases
CCCGCATGCCAGTTTCGAGACAACCGAAGTCTTCGGAGGCGATCGCCCGCTTGGGCTGATAACCTTCAGTGACAAAGGCG
AAATTCTGACGTCAGAACGC

Downstream 100 bases:

>100_bases
GCGCTGCTCTGGCCCGGTTTGATCTATCGGGCGTGGAATTGTTGGCAAGTCGAGGCCAATGGAACGCTCTGCGCTATACT
GCACCGCCGTTGGAAATGGC

Product: sensory transduction histidine kinase, putative

Products: NA

Alternate protein names: Sensory Transduction Histidine Kinase; Sensor Histidine Kinase; Two-Component Sensor Histidine Kinase; Sensory Box Histidine Kinase; Histidine Kinase Family; Multisensor Signal Transduction Histidine Kinase; Two Component Sensor Kinase; Two-Component Hybrid Sensor And Regulator; Histidine Kinase Dimerisation/Phosphoacceptor; PAS Sensor Protein; Histidine Kinase Sensor Protein; Sensory Transduction Regulatory Protein; PAS Fold Family; Two-Component System Sensor Histidine Kinase; Multi-Sensor Signal Transduction Histidine Kinase; Periplasmic Sensor Signal Transduction Histidine Kinase; Two-Component Histidine Kinase; Histidine Kinase Family Protein; Ethylene Response Sensor Protein; Response Regulator; Two-Component Sensor Histidine Kinase Protein; Sensory Transduction Protein Kinase; Two Component Hybrid Sensor Histidine Kinase And Regulator; Sensor Histidine Kinase And Response Regulator Protein; Two Component Sensor Histidine Kinase; Multi-Sensor Signal Transduction Multi-Kinase

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MLATARDSLPDNVDLQDLIADDPYTFTAVSANEIERTYAFVPLTAGNAYALGTWNTDAALLQGEAGYWRTIILAALMWLG
SVLVIFLIMQLLVIRGIKRLRTQVRSFRDTRTIPAGEIVAKGELYDLEVDIVAMAETIVRDEAELEDAVHEKNVLLKEVH
HRVKNNLQLINSIINMILRGAKSPETRTVVKRLQDRVMALASVHRTIYQAQSMDRVDASEIVREIVNQGVAIGLPRGSDV
DIRCNLSPVSLYPDQAMPLSLLVSEAITNALKYVGGDNAFIAVDLSTTSTDDEDGTSRHTATLRIANTVGDTVDDDEGTG
LGSQLLRAFTHQLDGEAVTSNHSGLYSFSTTFNISAFNPEESDFVEKRAEED

Sequences:

>Translated_372_residues
MLATARDSLPDNVDLQDLIADDPYTFTAVSANEIERTYAFVPLTAGNAYALGTWNTDAALLQGEAGYWRTIILAALMWLG
SVLVIFLIMQLLVIRGIKRLRTQVRSFRDTRTIPAGEIVAKGELYDLEVDIVAMAETIVRDEAELEDAVHEKNVLLKEVH
HRVKNNLQLINSIINMILRGAKSPETRTVVKRLQDRVMALASVHRTIYQAQSMDRVDASEIVREIVNQGVAIGLPRGSDV
DIRCNLSPVSLYPDQAMPLSLLVSEAITNALKYVGGDNAFIAVDLSTTSTDDEDGTSRHTATLRIANTVGDTVDDDEGTG
LGSQLLRAFTHQLDGEAVTSNHSGLYSFSTTFNISAFNPEESDFVEKRAEED
>Mature_372_residues
MLATARDSLPDNVDLQDLIADDPYTFTAVSANEIERTYAFVPLTAGNAYALGTWNTDAALLQGEAGYWRTIILAALMWLG
SVLVIFLIMQLLVIRGIKRLRTQVRSFRDTRTIPAGEIVAKGELYDLEVDIVAMAETIVRDEAELEDAVHEKNVLLKEVH
HRVKNNLQLINSIINMILRGAKSPETRTVVKRLQDRVMALASVHRTIYQAQSMDRVDASEIVREIVNQGVAIGLPRGSDV
DIRCNLSPVSLYPDQAMPLSLLVSEAITNALKYVGGDNAFIAVDLSTTSTDDEDGTSRHTATLRIANTVGDTVDDDEGTG
LGSQLLRAFTHQLDGEAVTSNHSGLYSFSTTFNISAFNPEESDFVEKRAEED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40910; Mature: 40910

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATARDSLPDNVDLQDLIADDPYTFTAVSANEIERTYAFVPLTAGNAYALGTWNTDAAL
CCCCCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHEEEEEEEECCCEEEEECCCCCHHE
LQGEAGYWRTIILAALMWLGSVLVIFLIMQLLVIRGIKRLRTQVRSFRDTRTIPAGEIVA
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
KGELYDLEVDIVAMAETIVRDEAELEDAVHEKNVLLKEVHHRVKNNLQLINSIINMILRG
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AKSPETRTVVKRLQDRVMALASVHRTIYQAQSMDRVDASEIVREIVNQGVAIGLPRGSDV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCE
DIRCNLSPVSLYPDQAMPLSLLVSEAITNALKYVGGDNAFIAVDLSTTSTDDEDGTSRHT
EEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEE
ATLRIANTVGDTVDDDEGTGLGSQLLRAFTHQLDGEAVTSNHSGLYSFSTTFNISAFNPE
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEEECCCC
ESDFVEKRAEED
HHHHHHHHCCCC
>Mature Secondary Structure
MLATARDSLPDNVDLQDLIADDPYTFTAVSANEIERTYAFVPLTAGNAYALGTWNTDAAL
CCCCCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHEEEEEEEECCCEEEEECCCCCHHE
LQGEAGYWRTIILAALMWLGSVLVIFLIMQLLVIRGIKRLRTQVRSFRDTRTIPAGEIVA
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
KGELYDLEVDIVAMAETIVRDEAELEDAVHEKNVLLKEVHHRVKNNLQLINSIINMILRG
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AKSPETRTVVKRLQDRVMALASVHRTIYQAQSMDRVDASEIVREIVNQGVAIGLPRGSDV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCE
DIRCNLSPVSLYPDQAMPLSLLVSEAITNALKYVGGDNAFIAVDLSTTSTDDEDGTSRHT
EEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEE
ATLRIANTVGDTVDDDEGTGLGSQLLRAFTHQLDGEAVTSNHSGLYSFSTTFNISAFNPE
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEEECCCC
ESDFVEKRAEED
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA