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The map label for this gene is 110679392

Identifier: 110679392

GI number: 110679392

Start: 2017551

End: 2018513

Strand: Reverse

Name: 110679392

Synonym: RD1_2115

Alternate gene names: NA

Gene position: 2018513-2017551 (Counterclockwise)

Preceding gene: 110679393

Following gene: 110679391

Centisome position: 48.84

GC content: 57.74

Gene sequence:

>963_bases
ATGAGCCCAGAACCCATCATCTATGGCCTGATCTTTATCGGCGTGCTTGTTCTGGTCGAGGGTCTTTACCTCGTGACCTT
CGGCAAATCCATCAGCCTGAACAGCCGGGTGAACCGCAGACTTGAGATGCTGGACAAGGGCACGGGCCGCGATGAAGTAC
TGGAAAAGCTGCGCAAGGAAATGCAGCAGCACATGAAGTCGAAGTCGATCCCGCTCTATTCGCTGCTCGGTGAAAAGGCG
CAAAAGGCCGCGATTGCCTTCACGCCAAGCCAGCTGGTCATGATCATGGGCATGCTCGCGGTCGTTGCCTTTCTGGGCCT
GAGCGTGGGCACGGCTTCATCCCTGCCTGTGCGGATTATGATGTCCATCGGCATCGGTGTCGGTGCTGTCTATTTCTGGG
TTTCCAGCAAGGCCAACAAGCGCCTCGCCATGATCGAAGAACAACTGCCCGATGCGGTGGAACTGATGGTCCGCTCCCTG
CGGGTTGGGCATCCGTTCTCCTCGGCGGTGCAGATCGTCTCCAAGGAAGTGCAGGACCCGCTGGCATCCGAAATGGGTGT
CATCGCGGATGAAAGCGCGTATGGGCGTGATGTCGGTGACGCCCTCAAGGAAATGGCGGAGCGTCTGGACATGCAGGATT
TGCGCTTTCTGGCGGTTGCGGTGAACATCCAACAGACCTCCGGCGGCAATCTTGCGGAAATCCTCGCTGGCCTCGCCAAG
GTGATCCGGGCGCGCTTTCGCCTCTTTCGCCGGGTCAAAGCCATCACCGCCGAGGCAAAGTGGTCAGGCAAGTTCCTCTC
TGCCTTTCCGGTCGTGGCGCTGATCGTGATCAATGTCGGCGATCCGAATTACTATGACGCGGTGCGCGATCATGCGTATT
TCATCCCCGCATGTTTCCTTGTGGGCATCTTCCTCGCGTTGAACCTTTTTGTCATGCGCGTCCTGACCGACATCAAAGTA
TAG

Upstream 100 bases:

>100_bases
TATGTGGGGCTACGATTTGCCGGCTTCCATCTATGAACCCACCGCAGCCCCGCAAGGGTTTTCAACGTGACCTGCCGTTG
CGTCACTTGAGGATTTGACC

Downstream 100 bases:

>100_bases
GAAGTGAGATGATGGATTTCTTTCACAATATCAACGCGTTGATTATTGAATACCTTGGCCCCCTCGGCCCGGTGATCCTG
CTGGGCACGCTGGGTCTGAT

Product: type II secretion system protein, putative

Products: NA

Alternate protein names: Flp Pilus Assembly Protein TadB; Type II Secretion System F Domain Protein; Pilus Assembly Protein; Flp Pilus Assembly Protein; Type II Secretion System F Domain-Containing Protein; Bacterial Type II Secretion System Protein F Domain; Pilus Assembly Protein TadB; Type II Secretion System Protein F; Type II Secretion System F Domain; Type II/IV Secretion System Protein TadC Subfamily; TadB Protein; Tad Secretion System Pilus Assembly Protein; Type II Secretion System F Protein; Secretion System Protein; Type II Secretion System; Type II/IV Secretion System Membrane Protein; Tad Secretion System Secretion Accessory Protein; Component Of Type IV Pilus; Type II Secretion System Integral Membrane Subunit; Type II Secretion System Protein F Domain; Flp Pilus Assembly Protein TadC; Tight Adherence TadB-Like Transmembrane Protein; Secretion System Protein TadB; Tight Adherence TadB-Related Transmembrane Protein; Integral Membrane Protein; Transmembrane Pilus Component Protein; Components Of Type IV Pilus; Bacterial Type II Secretion System Protein F Domain Protein; TadB-Like Pilus Assembly Protein; TadC Family Type II/IV Secretion System Protein

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MSPEPIIYGLIFIGVLVLVEGLYLVTFGKSISLNSRVNRRLEMLDKGTGRDEVLEKLRKEMQQHMKSKSIPLYSLLGEKA
QKAAIAFTPSQLVMIMGMLAVVAFLGLSVGTASSLPVRIMMSIGIGVGAVYFWVSSKANKRLAMIEEQLPDAVELMVRSL
RVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAK
VIRARFRLFRRVKAITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGIFLALNLFVMRVLTDIKV

Sequences:

>Translated_320_residues
MSPEPIIYGLIFIGVLVLVEGLYLVTFGKSISLNSRVNRRLEMLDKGTGRDEVLEKLRKEMQQHMKSKSIPLYSLLGEKA
QKAAIAFTPSQLVMIMGMLAVVAFLGLSVGTASSLPVRIMMSIGIGVGAVYFWVSSKANKRLAMIEEQLPDAVELMVRSL
RVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAK
VIRARFRLFRRVKAITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGIFLALNLFVMRVLTDIKV
>Mature_319_residues
SPEPIIYGLIFIGVLVLVEGLYLVTFGKSISLNSRVNRRLEMLDKGTGRDEVLEKLRKEMQQHMKSKSIPLYSLLGEKAQ
KAAIAFTPSQLVMIMGMLAVVAFLGLSVGTASSLPVRIMMSIGIGVGAVYFWVSSKANKRLAMIEEQLPDAVELMVRSLR
VGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKV
IRARFRLFRRVKAITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGIFLALNLFVMRVLTDIKV

Specific function: Unknown

COG id: COG4965

COG function: function code U; Flp pilus assembly protein TadB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35156; Mature: 35025

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPEPIIYGLIFIGVLVLVEGLYLVTFGKSISLNSRVNRRLEMLDKGTGRDEVLEKLRKE
CCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
MQQHMKSKSIPLYSLLGEKAQKAAIAFTPSQLVMIMGMLAVVAFLGLSVGTASSLPVRIM
HHHHHHHCCCCHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
MSIGIGVGAVYFWVSSKANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDP
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LASEMGVIADESAYGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCCHHHHHHHHHH
VIRARFRLFRRVKAITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHH
VGIFLALNLFVMRVLTDIKV
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SPEPIIYGLIFIGVLVLVEGLYLVTFGKSISLNSRVNRRLEMLDKGTGRDEVLEKLRKE
CCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
MQQHMKSKSIPLYSLLGEKAQKAAIAFTPSQLVMIMGMLAVVAFLGLSVGTASSLPVRIM
HHHHHHHCCCCHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
MSIGIGVGAVYFWVSSKANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDP
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LASEMGVIADESAYGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCCHHHHHHHHHH
VIRARFRLFRRVKAITAEAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHH
VGIFLALNLFVMRVLTDIKV
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA