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The map label for this gene is 110679391

Identifier: 110679391

GI number: 110679391

Start: 2016556

End: 2017623

Strand: Reverse

Name: 110679391

Synonym: RD1_2113

Alternate gene names: NA

Gene position: 2017623-2016556 (Counterclockwise)

Preceding gene: 110679392

Following gene: 110679390

Centisome position: 48.82

GC content: 56.65

Gene sequence:

>1068_bases
ATGTTTCCTTGTGGGCATCTTCCTCGCGTTGAACCTTTTTGTCATGCGCGTCCTGACCGACATCAAAGTATAGGAAGTGA
GATGATGGATTTCTTTCACAATATCAACGCGTTGATTATTGAATACCTTGGCCCCCTCGGCCCGGTGATCCTGCTGGGCA
CGCTGGGTCTGATCATGATCGGCGTGACCGTTGCCCTGATGCTGGCCCAGCCCGAAGACCCGATAGAAAAGCTCAAAAGG
CAAATCCAGACCCCTGAGACCAACGCCCCCGAACAACGCCTGCGTCAGGGCGAACGCAATGAACAGCTGCAAAGGTTTGC
GTCCTTTCTCGAACCACAGGACGTCGCGGAACTGAGCGCGCGGCAATTGATGCTGCGTCAGGCCGGGTATCAAAGCCAGG
ACGCTGTCCGCTTTTTCCACTTTGCACAATTTGCCTTGGGGATTGCGGGGTTGGTTCTCGCCTTTGTCTACCTCAACCTG
CTGGGCCACGGTGAGGGGTTCACCACGCAGAAAATGATGATCTATACGATCATTCCCGGCGCGGTGGGGTATTATCTGCC
GGTCTATTGGGTGCGACGCCGGGTCGACGCCCGCAAGGATGAAATCACACGCGGTTTCCCCGACAGCCTTGATATGATGC
TGGTCTGTGTCGAGGCGGGCCAGTCGCTGGATCAGTGCATCGTGCGTGTCTCCAAGGAGTTGCACGCCTCCTACCCCGCG
CTGGCACAGGAATTTGATGTGGTGGCCTATGAGATGAAGGCGGGGAAGGACAAAACGACTGTCCTGAATGATTTTGGCGA
ACGCTGCGGTGTGCAGGATGTGTCGTCCTTTGTGACCGTGCTGAACCAGTCGCAGCAATTTGGCACATCCATCGCCGAGG
CCCTGCGGGTCTATGCAGAAGAGATGCGCGATAAACGTGTGATGCGCGCCGAAGAGGCCGCAAACAAGTTGCCAACCAAG
ATGACCCTTGCCACTATGATGCTGACGGTCCCGCCCCTGCTGATCATTCTGGTTGGCCCATCGGTGCACGGGATCACACA
ACTGGGGAATCTGGGCGCCGGACAATGA

Upstream 100 bases:

>100_bases
AGTTCCTCTCTGCCTTTCCGGTCGTGGCGCTGATCGTGATCAATGTCGGCGATCCGAATTACTATGACGCGGTGCGCGAT
CATGCGTATTTCATCCCCGC

Downstream 100 bases:

>100_bases
AAACAGCAAAACGGCGGGCTTTTGCCTTTGCCACCTTTGCGATTGCTGGATTGGCCGCGTGTGAAAACACAAGCAGCCCG
TCGCTGCCCAAAGATCAGGT

Product: TadC family type II/IV secretion system protein

Products: NA

Alternate protein names: Flp Pilus Assembly Protein TadC; Type II Secretion System F Domain Protein; Type II/IV Secretion System Protein TadC Subfamily; Flp Pilus Assembly Protein; Type II Secretion System F Domain-Containing Protein; Bacterial Type II Secretion System Protein F Domain; Pilus Assembly Protein; Tad Secretion System Secretion Accessory Protein; Type II Secretion System Protein F; Type II Secretion System F Domain; Integral Membrane Protein; TadC Protein; Tight Adherence TadC-Like Transmembrane Protein; Pilus Component Protein; TadC Pilus Assembly Protein; Type II Secretion System Protein F Domain Protein; TadC Family Type II/IV Secretion System Protein; Tight Adherence TadC Related Transmembrane Protein; Pilus Assembly Protein TadC; Tight Adherence TadC-Related Transmembrane Protein; Type II Secretion System; Von Willebrand Factor Type A; Component Of Type IV Pilus; Type II Secretion System Integral Membrane Subunit; Component Of Pilus Protein; TadC Component Of Type IV Pilus; Type II Secretion System Protein F Domain; Secretion System Protein TadC; Putative Tight Adherence TadC-Like Transmembrane Protein; TadC Subunit; Tyrosine Phenol-Lyase; Components Of Type IV Pilus TadC; Fimbriae-Related Membrane Protein; Pilus Assemble Protein; Bipartite Nuclear Localization Signal Containing Protein; Components Of Type IV Pilus

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MFPCGHLPRVEPFCHARPDRHQSIGSEMMDFFHNINALIIEYLGPLGPVILLGTLGLIMIGVTVALMLAQPEDPIEKLKR
QIQTPETNAPEQRLRQGERNEQLQRFASFLEPQDVAELSARQLMLRQAGYQSQDAVRFFHFAQFALGIAGLVLAFVYLNL
LGHGEGFTTQKMMIYTIIPGAVGYYLPVYWVRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPA
LAQEFDVVAYEMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAANKLPTK
MTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ

Sequences:

>Translated_355_residues
MFPCGHLPRVEPFCHARPDRHQSIGSEMMDFFHNINALIIEYLGPLGPVILLGTLGLIMIGVTVALMLAQPEDPIEKLKR
QIQTPETNAPEQRLRQGERNEQLQRFASFLEPQDVAELSARQLMLRQAGYQSQDAVRFFHFAQFALGIAGLVLAFVYLNL
LGHGEGFTTQKMMIYTIIPGAVGYYLPVYWVRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPA
LAQEFDVVAYEMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAANKLPTK
MTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ
>Mature_355_residues
MFPCGHLPRVEPFCHARPDRHQSIGSEMMDFFHNINALIIEYLGPLGPVILLGTLGLIMIGVTVALMLAQPEDPIEKLKR
QIQTPETNAPEQRLRQGERNEQLQRFASFLEPQDVAELSARQLMLRQAGYQSQDAVRFFHFAQFALGIAGLVLAFVYLNL
LGHGEGFTTQKMMIYTIIPGAVGYYLPVYWVRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPA
LAQEFDVVAYEMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAANKLPTK
MTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ

Specific function: Unknown

COG id: COG2064

COG function: function code NU; Flp pilus assembly protein TadC

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39603; Mature: 39603

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPCGHLPRVEPFCHARPDRHQSIGSEMMDFFHNINALIIEYLGPLGPVILLGTLGLIMI
CCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVTVALMLAQPEDPIEKLKRQIQTPETNAPEQRLRQGERNEQLQRFASFLEPQDVAELSA
HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
RQLMLRQAGYQSQDAVRFFHFAQFALGIAGLVLAFVYLNLLGHGEGFTTQKMMIYTIIPG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHH
AVGYYLPVYWVRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
LAQEFDVVAYEMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAE
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MFPCGHLPRVEPFCHARPDRHQSIGSEMMDFFHNINALIIEYLGPLGPVILLGTLGLIMI
CCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVTVALMLAQPEDPIEKLKRQIQTPETNAPEQRLRQGERNEQLQRFASFLEPQDVAELSA
HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
RQLMLRQAGYQSQDAVRFFHFAQFALGIAGLVLAFVYLNLLGHGEGFTTQKMMIYTIIPG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHH
AVGYYLPVYWVRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
LAQEFDVVAYEMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAE
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVGPSVHGITQLGNLGAGQ
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA