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The map label for this gene is dgdR [H]

Identifier: 110679287

GI number: 110679287

Start: 1911511

End: 1912386

Strand: Direct

Name: dgdR [H]

Synonym: RD1_2004

Alternate gene names: 110679287

Gene position: 1911511-1912386 (Clockwise)

Preceding gene: 110679278

Following gene: 110679288

Centisome position: 46.25

GC content: 61.3

Gene sequence:

>876_bases
ATGAGAAATCTGGACGTCACCACGCTCCGTTCCTTTGTCGCGGTGGCCGATTCCGGCGGTGTCACCCGCGCAGCAGGGTT
CTTGCACCTGACGCAATCGGCAGTGTCGATGCAACTGAAACGTCTTGAAGAGGTGCTCGATGTCTCCTTGCTGGACCGCT
CCGGGCGCACCATTGCCCTCACCGCTTCGGGAGAGCAGCTGTTGGTCTATGCGCGGCGCATGGTGGCATTGAATGATGAG
GTGATCGGCAGGTTGACCGATCAGGCCTATGAGGGCGAAATCGTGCTGGGCGTGCCGCATGATATCGTCTACCCGGCCAT
TCCGCAGGTTCTGAAGCAGTTCCATGCGGCGTTTCCGCGGGTCAAGGTGCACCTTGTTTCCTCCTATACCCGCGCGCTCA
AGGATAAATTCGGGCGGGGGGAGTGCGATGTGATCCTGACGACCGAAACATCGCTGGATGCGGGGGCGCAAACGCTGTGC
TGCAAGCCGCTGAAGTGGGTTGGGGCACCGGGCGGCGCTGCGTGGCGGCAAAAACCGCTGAAACTGGCGTTCGGGCGGTT
GTGCACCTTTCGCCCGCGCGTGGTCGAGGCGCTGGATACCGCCGGTATCCCTTGGGATGTCATTGTCGAAACGGAAAGCG
ACCGCACCATCGAAGCAACCGTCAGCGCCGATCTCGCCATTCACACGATGATCGAGGGCACAGAGCCGCCGCACCTGGAA
CGGATTGATCACGGCGGTGTTCTGCCGGACCTGCCGCTGCAGCAGATCAACCTCTACGGCGCGCATAGCAGCAAAGGGGT
GATTCACGATACTTTGGCGGATTACCTGCGGCGCGCGTTTTCCGCGCCCGAGCATCCGAAGCTCAAAGCCGTGTAA

Upstream 100 bases:

>100_bases
GATGGTGTTTGGGTTTGTATCAATTCTCTTGATGTATATGGCAGACGCGTTAAGATGTTTAAAACGAATGTTTGTGAAGC
ATACCATCAAGAATGTTGAT

Downstream 100 bases:

>100_bases
GGGCGGCACACGGCGCTGGATGCCGCGCCACAGGCCGTCAAAGCCGCCGATAAGCTGGATTCCGCTGATTGAACTTTTCG
TGAACGCGGCAGGCCCGGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MRNLDVTTLRSFVAVADSGGVTRAAGFLHLTQSAVSMQLKRLEEVLDVSLLDRSGRTIALTASGEQLLVYARRMVALNDE
VIGRLTDQAYEGEIVLGVPHDIVYPAIPQVLKQFHAAFPRVKVHLVSSYTRALKDKFGRGECDVILTTETSLDAGAQTLC
CKPLKWVGAPGGAAWRQKPLKLAFGRLCTFRPRVVEALDTAGIPWDVIVETESDRTIEATVSADLAIHTMIEGTEPPHLE
RIDHGGVLPDLPLQQINLYGAHSSKGVIHDTLADYLRRAFSAPEHPKLKAV

Sequences:

>Translated_291_residues
MRNLDVTTLRSFVAVADSGGVTRAAGFLHLTQSAVSMQLKRLEEVLDVSLLDRSGRTIALTASGEQLLVYARRMVALNDE
VIGRLTDQAYEGEIVLGVPHDIVYPAIPQVLKQFHAAFPRVKVHLVSSYTRALKDKFGRGECDVILTTETSLDAGAQTLC
CKPLKWVGAPGGAAWRQKPLKLAFGRLCTFRPRVVEALDTAGIPWDVIVETESDRTIEATVSADLAIHTMIEGTEPPHLE
RIDHGGVLPDLPLQQINLYGAHSSKGVIHDTLADYLRRAFSAPEHPKLKAV
>Mature_291_residues
MRNLDVTTLRSFVAVADSGGVTRAAGFLHLTQSAVSMQLKRLEEVLDVSLLDRSGRTIALTASGEQLLVYARRMVALNDE
VIGRLTDQAYEGEIVLGVPHDIVYPAIPQVLKQFHAAFPRVKVHLVSSYTRALKDKFGRGECDVILTTETSLDAGAQTLC
CKPLKWVGAPGGAAWRQKPLKLAFGRLCTFRPRVVEALDTAGIPWDVIVETESDRTIEATVSADLAIHTMIEGTEPPHLE
RIDHGGVLPDLPLQQINLYGAHSSKGVIHDTLADYLRRAFSAPEHPKLKAV

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=291, Percent_Identity=28.8659793814433, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=28.3870967741935, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=37.956204379562, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788887, Length=143, Percent_Identity=35.6643356643357, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=140, Percent_Identity=27.8571428571429, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=155, Percent_Identity=28.3870967741935, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=153, Percent_Identity=30.0653594771242, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=150, Percent_Identity=27.3333333333333, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786713, Length=176, Percent_Identity=27.8409090909091, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790399, Length=148, Percent_Identity=28.3783783783784, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788296, Length=224, Percent_Identity=24.5535714285714, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31802; Mature: 31802

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLDVTTLRSFVAVADSGGVTRAAGFLHLTQSAVSMQLKRLEEVLDVSLLDRSGRTIAL
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
TASGEQLLVYARRMVALNDEVIGRLTDQAYEGEIVLGVPHDIVYPAIPQVLKQFHAAFPR
EECCCHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
VKVHLVSSYTRALKDKFGRGECDVILTTETSLDAGAQTLCCKPLKWVGAPGGAAWRQKPL
EEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHCCCHHHCCCCCCCHHHCCCH
KLAFGRLCTFRPRVVEALDTAGIPWDVIVETESDRTIEATVSADLAIHTMIEGTEPPHLE
HHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCEEEEEEECCCCCCCHH
RIDHGGVLPDLPLQQINLYGAHSSKGVIHDTLADYLRRAFSAPEHPKLKAV
HCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRNLDVTTLRSFVAVADSGGVTRAAGFLHLTQSAVSMQLKRLEEVLDVSLLDRSGRTIAL
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
TASGEQLLVYARRMVALNDEVIGRLTDQAYEGEIVLGVPHDIVYPAIPQVLKQFHAAFPR
EECCCHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
VKVHLVSSYTRALKDKFGRGECDVILTTETSLDAGAQTLCCKPLKWVGAPGGAAWRQKPL
EEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHCCCHHHCCCCCCCHHHCCCH
KLAFGRLCTFRPRVVEALDTAGIPWDVIVETESDRTIEATVSADLAIHTMIEGTEPPHLE
HHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCEEEEEEECCCCCCCHH
RIDHGGVLPDLPLQQINLYGAHSSKGVIHDTLADYLRRAFSAPEHPKLKAV
HCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]