Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is sam [H]

Identifier: 110679205

GI number: 110679205

Start: 1827351

End: 1828286

Strand: Reverse

Name: sam [H]

Synonym: RD1_1916

Alternate gene names: 110679205

Gene position: 1828286-1827351 (Counterclockwise)

Preceding gene: 110679206

Following gene: 110679203

Centisome position: 44.24

GC content: 56.84

Gene sequence:

>936_bases
ATGACAATTGACCGACCTTTCCTTGGCATCATGCTGATGCTGGGATTTTGCGTGCTTGCGCCAGTCGGCGATGCAATTGC
GAAAATCCTCGGACAAACCGTGCCAATCGGCCAGTTGGTGCTGGTCCGTTTCGCGGTTCAGGCTGTGCTGCTGATTCCAC
TGGTCTGGCTCACACATCGGCACTGGCGCATGAGCAAACGCGTGACATGGCTGACTTTCCTGCGCACTATCCTCCATATT
CTTGGCATAGGCGCGATGGTTACCGCGTTGAAATACCTGCCCCTTGCGGATGCGATCGCCATTGCCTTCGTGATGCCGTT
CATCATGCTCGTGCTGGGTAAATTCGCCCTCGGCGAAGAGGTGGGCGCGCGCCGTATCATTGCCTGCGCCGTGGGGTTTC
TTGGCACGTTGCTGGTCGTGCAGCCCAGCTTTGCCCAGGTCGGCTGGCCTGCCCTTTTGCCCGTTGGCGTGGCCATCAAC
TTTGCGCTTTTCATGCTGGTTACCCGCCAGATCGCAAAGGAAACCGATCCAATCAGCCTGCAGGCCGTCAGCGGCGTGAT
GGCAGTGTTTGTGATCCTACCGATTCTTTTGATCTTTCAAAACAGCAGTTTTCTACAACTCCGGATTGTAAATGTGTCGT
CCCATGACTGGGCCTTACTGCTGAGCATTGGCGTCTTGGGGACGGTCGCGCATCTGCTGATGACGTGGTCGCTGCGTTTT
GCCCCCTCGGCCACGCTTGCGCCGATGCAATATCTGGAAATACCCTTTGCCACGATCCTCGGCTTTATCGTGTTTGGCGA
TTTTCCAAACCCAGTGGCAAGCCTTGGCATCATGATTACGATTGCAGCGGGCCTTTATGTGGTGCTGCGGGAGCGGGCCA
TCGCCTTGTCGCTGAAAGCGCCTGCACAACCGGCTGAAGAAACGCGCGCGGCATGA

Upstream 100 bases:

>100_bases
GAAACCTCGCTTGGCGGATTGGCGGTAAACGTGCCGAACTGCTGAGCAGGAAAAACAACCTGTGCTTGCAATGCCATTGG
GATCGCCTTAGGCTTGATGC

Downstream 100 bases:

>100_bases
TGCACAACATCACCGGGGCATCCATTTCAAGCGATACCGGCCCGGTTGCCCGATTTGATGTACCTGTCCGCGCACCGGGC
GCAAAATCAATCCCGTCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHRHWRMSKRVTWLTFLRTILHI
LGIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEEVGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAIN
FALFMLVTRQIAKETDPISLQAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRF
APSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKAPAQPAEETRAA

Sequences:

>Translated_311_residues
MTIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHRHWRMSKRVTWLTFLRTILHI
LGIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEEVGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAIN
FALFMLVTRQIAKETDPISLQAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRF
APSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKAPAQPAEETRAA
>Mature_310_residues
TIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHRHWRMSKRVTWLTFLRTILHIL
GIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEEVGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAINF
ALFMLVTRQIAKETDPISLQAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRFA
PSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKAPAQPAEETRAA

Specific function: Transports S-adenosylmethionine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33699; Mature: 33568

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HWRMSKRVTWLTFLRTILHILGIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAINFALFMLVTRQIAKETDPISL
HHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
QAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRF
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
APSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKA
CCCCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
PAQPAEETRAA
CCCCCHHCCCC
>Mature Secondary Structure 
TIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HWRMSKRVTWLTFLRTILHILGIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAINFALFMLVTRQIAKETDPISL
HHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
QAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRF
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
APSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKA
CCCCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
PAQPAEETRAA
CCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA