Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is sam [H]

Identifier: 110679154

GI number: 110679154

Start: 1784020

End: 1784913

Strand: Direct

Name: sam [H]

Synonym: RD1_1864

Alternate gene names: 110679154

Gene position: 1784020-1784913 (Clockwise)

Preceding gene: 110679153

Following gene: 110679158

Centisome position: 43.16

GC content: 61.86

Gene sequence:

>894_bases
ATGACAGGCACGGATAAACCCGGTCTCGCCATCGGCTTGCGCATCCTGTCGGGTGTTCTCTTTGCCGGCATGCTGGTCTG
CGTCAAAGCTGTGAGCGCGGATGTGCCATTGGGCGAAATCGTCTTTTACCGCTCCGCCTTTGCGCTGATCCCGCTGGTGG
TTTTCCTCTGGATCAGGCGGGAATTTCCGGGCGGTCTGGCAACCAAACGCCCCGTCGCCCATCTGTTACGGGCGAGTTTC
GGGGCTTTGGCGATGTTTGCTTCCTTTGCGGCGATTGCGCGGCTGAATGTGGCTGAGGCAACCCTGATTGCGCAGCTTTC
GCCGATCCTGATGGCGCTTGCGGCGGTTGTTTTCCTGTCGGAACGGCTGACGCGCTGGCGGGTTGGAGGCCTTGCGCTCG
GGTTTGCCGGGGTCGTCATTCTGGTCTGGCCGGAGCTTGGCGGGCGCGCACCGGACGCGGCCCGTCTTGCTGGTTTTGCA
ATCGGCTTGCTGGGGGCGGCGCTTACGGCATTTGCGCTCATCATGGTGCGCAGCCTGAACCGCACCGAAAGCCCCGGTGC
CATCGCGTTCTATTTTGCGCTGGCGTCCATGATAGGGGGGCTGTTGACGCTGCCCTGGGGTTGGATCACGCCCGACATCT
GGACGCTGACGCTGTTGATCGGCGCTGGCCTATTCGGTGGTTTTGCCCATATCGCCATGACGCTTGCGTTCCGCTACGCC
GAAGCCAGCCGGATCGCGCCGTTTGAATATGTGGCGCTTCTGTGGCCTGTGCTCGCGGATCTGCTGATCTTCAATGTTGC
GCTTTCCACCAGTTTTCTGTTTGCACTGCCGCTTGTTCTGGGCGGTGCAGCGCTTGCAGCCGCCGAAAAGGGGCCGCGAA
CCCGAAAGGCATGA

Upstream 100 bases:

>100_bases
AGATGATCTGGCCGGGGCTTGCGGTCGTTTTCTGCGTCCTTGCGATCAACCTTGCCGGGGACGTGTTGCGCGACGCCTTG
ACCGAAGGGGATCACAGGAA

Downstream 100 bases:

>100_bases
GAATTGGACCAGATTGGTCCTGCTCCAGCCTCTCAGAAGGGATAGCGTGGTCCGGTACAAAGCTGTAGCGTCATGCGAAA
AACCTCAATCACGCAATGCT

Product: integral membrane protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRREFPGGLATKRPVAHLLRASF
GALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLSERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFA
IGLLGAALTAFALIMVRSLNRTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYA
EASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA

Sequences:

>Translated_297_residues
MTGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRREFPGGLATKRPVAHLLRASF
GALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLSERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFA
IGLLGAALTAFALIMVRSLNRTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYA
EASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA
>Mature_296_residues
TGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRREFPGGLATKRPVAHLLRASFG
ALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLSERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFAI
GLLGAALTAFALIMVRSLNRTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYAE
ASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA

Specific function: Transports S-adenosylmethionine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31337; Mature: 31206

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EFPGGLATKRPVAHLLRASFGALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFAIGLLGAALTAFALIMVRSLN
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EFPGGLATKRPVAHLLRASFGALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFAIGLLGAALTAFALIMVRSLN
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA