| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is proX [C]
Identifier: 110679133
GI number: 110679133
Start: 1764222
End: 1765181
Strand: Direct
Name: proX [C]
Synonym: RD1_1839
Alternate gene names: 110679133
Gene position: 1764222-1765181 (Clockwise)
Preceding gene: 110679132
Following gene: 110679135
Centisome position: 42.69
GC content: 56.25
Gene sequence:
>960_bases ATGACTTTGAAGATGAAACTGATGACTGCAGCGCTTGCCAGCGTGGTAAGCGTTCCCGCCTTCGCGGAAGAGGTGAAAAT CGGGGTGCCGACATGGACCGGGGCGCAGGCGATTGCCTATGTCTTGGGCGAGGTGGTCACAACACGCATTGGCGGAACAG TTGATTATGTTCCCGGCAACAACGCCACAATTTTCCAGGCCATGGACCAGGGCGAGGGCGACATTGACGTGCACCCTGAT GTCTGGCTGCCAAACCAGGAGAGCTTTACCAAGCAATATGTGGATGAAGCCGGCACCGTGACGCTGTCAACGAACCCCTA TCAGGGCAATCAGGGCTTCTGCGTGTCCAAGGATTTTGCAGCGGCCAACGACATCACCGACATTGCGGATCTGGGCCGCC CGGATGTGGCGGCCCTGATGGACAGCGATGGCAACGGGCTGGGCGAAATGTGGATTGGCGCACCCGGCTGGGCGTCTGCA AACGTCAATGAAGTAAAGGTTCGCGACTACGGCCTGCTCGACTTTATCGAGCCAATTCGCGCCGAAGAAGCGGTCAAGAC CGCACGGATCAAGGACAGTATTGCAAAGGGCGAGGGCTATGCGTTCTATTGCTATGAGCCGCATGCGGTTTGGTACATGT TTGACGTTGTCATGCTGACTGAGCCAGCTTTCGACCCGGAAAAATACATCATGGTGCAACCATCCGATGATGCGGACTGG TATGAGAAATCGATGGTGGCGACCAAGGATGACCTCAAGCAGGTCCAGATCGCATGGTCCAATTCCCTGCCCGAGCGTGC GCCAGCCATCGCGGAGTTCTTTGCGAATTTTCAGTTGACTGCCGATGATGTCAGCAGCCTTGCATTTGAGATCAGTGCGA ATGGCCGTGAACCATCAGACGTCGCAGCAGAGTGGGTTGCCGCGAATTCTGACCGCGTTGATGCAATGCTGGGCCTGTAA
Upstream 100 bases:
>100_bases ACAGGGGGCAGTGCCGCGCTCTTTGGCTACCCCGACACCTTCGGACTGCCCGGCTATGTAACATAAAAACGCAAGAAACA GACCAACAAGGAGACTAGAG
Downstream 100 bases:
>100_bases GAGGCGGAGTGAATCAAACATGATCGGCGCGCGTGATCGCGCCGATCATTCAAACAGCGGGTGGGGCGAGCATGCAAATC AATGACTGCGTTATCGAAAT
Product: glycine betaine/L-proline ABC transporter, substrate binding protein, putative
Products: ADP; phosphate; L-proline [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MTLKMKLMTAALASVVSVPAFAEEVKIGVPTWTGAQAIAYVLGEVVTTRIGGTVDYVPGNNATIFQAMDQGEGDIDVHPD VWLPNQESFTKQYVDEAGTVTLSTNPYQGNQGFCVSKDFAAANDITDIADLGRPDVAALMDSDGNGLGEMWIGAPGWASA NVNEVKVRDYGLLDFIEPIRAEEAVKTARIKDSIAKGEGYAFYCYEPHAVWYMFDVVMLTEPAFDPEKYIMVQPSDDADW YEKSMVATKDDLKQVQIAWSNSLPERAPAIAEFFANFQLTADDVSSLAFEISANGREPSDVAAEWVAANSDRVDAMLGL
Sequences:
>Translated_319_residues MTLKMKLMTAALASVVSVPAFAEEVKIGVPTWTGAQAIAYVLGEVVTTRIGGTVDYVPGNNATIFQAMDQGEGDIDVHPD VWLPNQESFTKQYVDEAGTVTLSTNPYQGNQGFCVSKDFAAANDITDIADLGRPDVAALMDSDGNGLGEMWIGAPGWASA NVNEVKVRDYGLLDFIEPIRAEEAVKTARIKDSIAKGEGYAFYCYEPHAVWYMFDVVMLTEPAFDPEKYIMVQPSDDADW YEKSMVATKDDLKQVQIAWSNSLPERAPAIAEFFANFQLTADDVSSLAFEISANGREPSDVAAEWVAANSDRVDAMLGL >Mature_318_residues TLKMKLMTAALASVVSVPAFAEEVKIGVPTWTGAQAIAYVLGEVVTTRIGGTVDYVPGNNATIFQAMDQGEGDIDVHPDV WLPNQESFTKQYVDEAGTVTLSTNPYQGNQGFCVSKDFAAANDITDIADLGRPDVAALMDSDGNGLGEMWIGAPGWASAN VNEVKVRDYGLLDFIEPIRAEEAVKTARIKDSIAKGEGYAFYCYEPHAVWYMFDVVMLTEPAFDPEKYIMVQPSDDADWY EKSMVATKDDLKQVQIAWSNSLPERAPAIAEFFANFQLTADDVSSLAFEISANGREPSDVAAEWVAANSDRVDAMLGL
Specific function: Member Of A Multicomponent Binding-Protein-Dependent Transport System (The Prou Transporter) Which Serves As The Glycine Betaine/L-Proline Transporter. [C]
COG id: COG2113
COG function: function code E; ABC-type proline/glycine betaine transport systems, periplasmic components
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34697; Mature: 34566
Theoretical pI: Translated: 3.94; Mature: 3.94
Prosite motif: PS00196 COPPER_BLUE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKMKLMTAALASVVSVPAFAEEVKIGVPTWTGAQAIAYVLGEVVTTRIGGTVDYVPGN CEEEHHHHHHHHHHHHHCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC NATIFQAMDQGEGDIDVHPDVWLPNQESFTKQYVDEAGTVTLSTNPYQGNQGFCVSKDFA CCEEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCC AANDITDIADLGRPDVAALMDSDGNGLGEMWIGAPGWASANVNEVKVRDYGLLDFIEPIR CCCCCHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEECCCHHHHHHHHH AEEAVKTARIKDSIAKGEGYAFYCYEPHAVWYMFDVVMLTEPAFDPEKYIMVQPSDDADW HHHHHHHHHHHHHHHCCCCEEEEEECCCEEEHHEEEHHHCCCCCCCCCEEEEECCCCCHH YEKSMVATKDDLKQVQIAWSNSLPERAPAIAEFFANFQLTADDVSSLAFEISANGREPSD HHHHHHCCHHHHHEEEEEECCCCCCCHHHHHHHHHCCEEEHHHHCCEEEEEECCCCCHHH VAAEWVAANSDRVDAMLGL HHHHHHHCCCCCCHHHHCC >Mature Secondary Structure TLKMKLMTAALASVVSVPAFAEEVKIGVPTWTGAQAIAYVLGEVVTTRIGGTVDYVPGN EEEHHHHHHHHHHHHHCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC NATIFQAMDQGEGDIDVHPDVWLPNQESFTKQYVDEAGTVTLSTNPYQGNQGFCVSKDFA CCEEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCC AANDITDIADLGRPDVAALMDSDGNGLGEMWIGAPGWASANVNEVKVRDYGLLDFIEPIR CCCCCHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEECCCHHHHHHHHH AEEAVKTARIKDSIAKGEGYAFYCYEPHAVWYMFDVVMLTEPAFDPEKYIMVQPSDDADW HHHHHHHHHHHHHHHCCCCEEEEEECCCEEEHHEEEHHHCCCCCCCCCEEEEECCCCCHH YEKSMVATKDDLKQVQIAWSNSLPERAPAIAEFFANFQLTADDVSSLAFEISANGREPSD HHHHHHCCHHHHHEEEEEECCCCCCCHHHHHHHHHCCEEEHHHHCCEEEEEECCCCCHHH VAAEWVAANSDRVDAMLGL HHHHHHHCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-proline [Periplasm]; H2O [C]
Specific reaction: ATP + L-proline [Periplasm] + H2O = ADP + phosphate + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA