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The map label for this gene is dcyD [H]

Identifier: 110679132

GI number: 110679132

Start: 1763174

End: 1764187

Strand: Direct

Name: dcyD [H]

Synonym: RD1_1838

Alternate gene names: 110679132

Gene position: 1763174-1764187 (Clockwise)

Preceding gene: 110679130

Following gene: 110679133

Centisome position: 42.66

GC content: 60.85

Gene sequence:

>1014_bases
GTGCGACTGGCCAAATACCCGCGCGTGACCTTGGGCCACTTCCCAACGCCGCTTGAGCCGATGGACCGCCTCAGCGCATA
TCTTGGCGGCCCGCGCCTGTGGGTAAAGCGCGACGACTGCACCGGCCTGTCTTCTGGCGGGAACAAGACCAGAAAGCTGG
AATACCTGATGGCTGACGCCCAGAAAAGGGGCGCCGACACGATCATTACCCAAGGTGCGACGCAATCCAACCACGCCCGC
CAAACGGCCGCAGCGGCGGCGCGGCTGGGGATGGAATGCCATATTCTGCTTGAGGACCGCACCGGGTCAAATGACGACAG
TTACACAATGAACGGCAACGTCTTGCTGGACCGTCTGCATGGCGCAAGCGTGTCCAAACGCAGTGGCGGCACGGATATGA
ATGCCGAAATGCAACTCCTCGCGGATAAATGCCGCAAGGCGGGAAAGACCCCCTATGTCGTTCCCGGTGGCGGATCGAAC
ACGATTGGCGCCTTGGGATACGTCAATTGCGCCCGTGAACTGGTAGAACAATCCATCCGCAAGGGGCTGGACGTTGATGC
CCTTGTTCACGCCACCGGCAGCGCAGGCACGCAGGCCGGTCTGGTGACGGGACTTGCCGCGATTGAGAGCGATATTCACC
TCCTCGGTATTGGCGTGCGCGCCGCGCAAGAGCAGCAAGAGAGCATGGTGCATGATCTTGCGCAGCGCACGGCGGCCGAT
CTGGGCGTACCGAATGTGATTTCGCGCCGCAGCGTGCGGGCCAATTGCGACTACGTCGGTCCGGGCTATGGCTTGCCGAC
GGCTGGTATGATCGGGGCGCTCAAGCTCTTGGCGCAGACGGAAGGGCTTTTGTTCGATCCGGTTTATTCTGGCAAGGGCC
TCGACGGGCTGATCGATTTGACCCGCAAGGGCCACTTTGATGGTATGAATAACGTTGTATTCCTGCACACAGGGGGCAGT
GCCGCGCTCTTTGGCTACCCCGACACCTTCGGACTGCCCGGCTATGTAACATAA

Upstream 100 bases:

>100_bases
AAGGCGATTTGGGCATGGGATGACGGCAATCGAACACGCAATGGTGCAACACGCGACGGAGCCGGCGGATTTGGTGGCAA
GCCGCTGCAAGGATCTGGCC

Downstream 100 bases:

>100_bases
AAACGCAAGAAACAGACCAACAAGGAGACTAGAGATGACTTTGAAGATGAAACTGATGACTGCAGCGCTTGCCAGCGTGG
TAAGCGTTCCCGCCTTCGCG

Product: D-cysteine desulfhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MRLAKYPRVTLGHFPTPLEPMDRLSAYLGGPRLWVKRDDCTGLSSGGNKTRKLEYLMADAQKRGADTIITQGATQSNHAR
QTAAAAARLGMECHILLEDRTGSNDDSYTMNGNVLLDRLHGASVSKRSGGTDMNAEMQLLADKCRKAGKTPYVVPGGGSN
TIGALGYVNCARELVEQSIRKGLDVDALVHATGSAGTQAGLVTGLAAIESDIHLLGIGVRAAQEQQESMVHDLAQRTAAD
LGVPNVISRRSVRANCDYVGPGYGLPTAGMIGALKLLAQTEGLLFDPVYSGKGLDGLIDLTRKGHFDGMNNVVFLHTGGS
AALFGYPDTFGLPGYVT

Sequences:

>Translated_337_residues
MRLAKYPRVTLGHFPTPLEPMDRLSAYLGGPRLWVKRDDCTGLSSGGNKTRKLEYLMADAQKRGADTIITQGATQSNHAR
QTAAAAARLGMECHILLEDRTGSNDDSYTMNGNVLLDRLHGASVSKRSGGTDMNAEMQLLADKCRKAGKTPYVVPGGGSN
TIGALGYVNCARELVEQSIRKGLDVDALVHATGSAGTQAGLVTGLAAIESDIHLLGIGVRAAQEQQESMVHDLAQRTAAD
LGVPNVISRRSVRANCDYVGPGYGLPTAGMIGALKLLAQTEGLLFDPVYSGKGLDGLIDLTRKGHFDGMNNVVFLHTGGS
AALFGYPDTFGLPGYVT
>Mature_337_residues
MRLAKYPRVTLGHFPTPLEPMDRLSAYLGGPRLWVKRDDCTGLSSGGNKTRKLEYLMADAQKRGADTIITQGATQSNHAR
QTAAAAARLGMECHILLEDRTGSNDDSYTMNGNVLLDRLHGASVSKRSGGTDMNAEMQLLADKCRKAGKTPYVVPGGGSN
TIGALGYVNCARELVEQSIRKGLDVDALVHATGSAGTQAGLVTGLAAIESDIHLLGIGVRAAQEQQESMVHDLAQRTAAD
LGVPNVISRRSVRANCDYVGPGYGLPTAGMIGALKLLAQTEGLLFDPVYSGKGLDGLIDLTRKGHFDGMNNVVFLHTGGS
AALFGYPDTFGLPGYVT

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=324, Percent_Identity=44.1358024691358, Blast_Score=262, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 35643; Mature: 35643

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLAKYPRVTLGHFPTPLEPMDRLSAYLGGPRLWVKRDDCTGLSSGGNKTRKLEYLMADA
CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
QKRGADTIITQGATQSNHARQTAAAAARLGMECHILLEDRTGSNDDSYTMNGNVLLDRLH
HHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEECCCEEEEECC
GASVSKRSGGTDMNAEMQLLADKCRKAGKTPYVVPGGGSNTIGALGYVNCARELVEQSIR
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
KGLDVDALVHATGSAGTQAGLVTGLAAIESDIHLLGIGVRAAQEQQESMVHDLAQRTAAD
CCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
LGVPNVISRRSVRANCDYVGPGYGLPTAGMIGALKLLAQTEGLLFDPVYSGKGLDGLIDL
CCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHH
TRKGHFDGMNNVVFLHTGGSAALFGYPDTFGLPGYVT
HHCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRLAKYPRVTLGHFPTPLEPMDRLSAYLGGPRLWVKRDDCTGLSSGGNKTRKLEYLMADA
CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
QKRGADTIITQGATQSNHARQTAAAAARLGMECHILLEDRTGSNDDSYTMNGNVLLDRLH
HHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEECCCEEEEECC
GASVSKRSGGTDMNAEMQLLADKCRKAGKTPYVVPGGGSNTIGALGYVNCARELVEQSIR
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
KGLDVDALVHATGSAGTQAGLVTGLAAIESDIHLLGIGVRAAQEQQESMVHDLAQRTAAD
CCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
LGVPNVISRRSVRANCDYVGPGYGLPTAGMIGALKLLAQTEGLLFDPVYSGKGLDGLIDL
CCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHH
TRKGHFDGMNNVVFLHTGGSAALFGYPDTFGLPGYVT
HHCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA