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The map label for this gene is ribD [H]

Identifier: 110679096

GI number: 110679096

Start: 1728689

End: 1729786

Strand: Direct

Name: ribD [H]

Synonym: RD1_1799

Alternate gene names: 110679096

Gene position: 1728689-1729786 (Clockwise)

Preceding gene: 110679095

Following gene: 110679097

Centisome position: 41.83

GC content: 67.12

Gene sequence:

>1098_bases
GTGACCGAGGCGTCCCGCTACATGGCGCTGGCCCTGTCGTTGGGGCGGCGGGGCTTTGGTCGTGTATGGCCGAACCCGGC
CGTGGGCTGCGTGATTGTCAAAGACGGCCGGATTATCGGGCGCGGCTGGACCCAACCGGGGGGCCGTCCGCATGCTGAGA
CGCAGGCGCTGGCGCAAGCCGCGGCGCAGGCGCGCGGTGCTGACGTCTATGTGACGCTGGAACCTTGCGCACATCACGGC
AAGACCCCACCCTGCGCAGAGGCATTGGTCAGGGCGGGCGTTGCGCGGGTTTTCGCGGCCACCGGGGACCCGGATCCGAG
GGTGCATGGTGCAGGTTTTCGCGCCTTGGAGCAGGCGGGCATTCATGTTCAGTCAGGCATTTTGGAAGCGCAGGCGCGCC
GGGACAACGCGGGGTTTTTTGCGCGCGTGGAACTGGATCGCCCTTTCATGACGCTCAAGCTTGCGGGCAGTTTTGACGGG
CGCATTGCAACCGGCACAGGCGAGAGCAAGTGGATCACGGGCCCGCAGGCACGCCGCGTGGTGCATGCATTGCGCGCGCG
GCATGATGCGGTGATGGTGGGCGCGGGTACGGCGCGCAAGGATGACCCGGCGCTGACCGTCCGGGACCTTGGCACCGCGT
GGCAGCCTGCGCGCGTTGTGATCAGTCGCAGGCTTGATGTGCCGCTGATGGGGGTCTTGGCCCGCACGGCGACCGAGGTG
CCGGTGATCTTATGTCATGGCAAGGACGCTGACCCGCAGTTGATCCGAACCTGGCAGGATTTGGGGGCTGTCCTGCTGCC
CTGCGCGGCGCGGGGTGGGCAATTGGACCCTGCGGATGTGATGCGCCAACTGGCGGGGCATGGTCTGACGCGGATCTTTT
GCGAGGGGGGCAGCGCCTTGGCGGCGTCTTTGTTCGAGGCCGACCTTGTGGATGAGTTGATCGGCTTCACCGCAGGTCTG
GCGATCGGGGCGGAGGGGTTGCCGTCGATCGGCGCCTTGGGGCTGAGCAAATTGTCTCGCGCACCGCGTTATGACCTGCG
CAGCACGCAGACCGTCGGCCCGGACGTCATGCACATCTGGGAGCGTGCGCAGCCCTGA

Upstream 100 bases:

>100_bases
TTGCCTATGTGCGTTTTGCCAGTGTGTACAAGAACTTTCAGGCCGCAGATGATTTTGACAAGTTTGTCAGTGAATTGCGC
CCGGACGTTCCCGGCGACGA

Downstream 100 bases:

>100_bases
TTGACACGCGGGGCAATGAACGCTTCTGCCACCGGTTGCACGGTGCACGAATGCCAGCCGCAAGGCCGTGACGCGCTGCG
GGGGCTTGTCAGCTTTGGGT

Product: riboflavin biosynthesis protein ribD

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MTEASRYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQAAAQARGADVYVTLEPCAHHG
KTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQSGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDG
RIATGTGESKWITGPQARRVVHALRARHDAVMVGAGTARKDDPALTVRDLGTAWQPARVVISRRLDVPLMGVLARTATEV
PVILCHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSALAASLFEADLVDELIGFTAGL
AIGAEGLPSIGALGLSKLSRAPRYDLRSTQTVGPDVMHIWERAQP

Sequences:

>Translated_365_residues
MTEASRYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQAAAQARGADVYVTLEPCAHHG
KTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQSGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDG
RIATGTGESKWITGPQARRVVHALRARHDAVMVGAGTARKDDPALTVRDLGTAWQPARVVISRRLDVPLMGVLARTATEV
PVILCHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSALAASLFEADLVDELIGFTAGL
AIGAEGLPSIGALGLSKLSRAPRYDLRSTQTVGPDVMHIWERAQP
>Mature_364_residues
TEASRYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQAAAQARGADVYVTLEPCAHHGK
TPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQSGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGR
IATGTGESKWITGPQARRVVHALRARHDAVMVGAGTARKDDPALTVRDLGTAWQPARVVISRRLDVPLMGVLARTATEVP
VILCHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSALAASLFEADLVDELIGFTAGLA
IGAEGLPSIGALGLSKLSRAPRYDLRSTQTVGPDVMHIWERAQP

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG0117

COG function: function code H; Pyrimidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=361, Percent_Identity=42.6592797783933, Blast_Score=271, Evalue=6e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 38687; Mature: 38556

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEASRYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQA
CCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCHHHHHHHHH
AAQARGADVYVTLEPCAHHGKTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAG
HHHCCCCEEEEEECCHHCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHCC
IHVQSGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGPQARRV
CCHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEECCCCCEEEECCCCCCCCCCHHHHHH
VHALRARHDAVMVGAGTARKDDPALTVRDLGTAWQPARVVISRRLDVPLMGVLARTATEV
HHHHHHCCCEEEEECCCCCCCCCCEEHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
PVILCHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSAL
CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHH
AASLFEADLVDELIGFTAGLAIGAEGLPSIGALGLSKLSRAPRYDLRSTQTVGPDVMHIW
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
ERAQP
HCCCC
>Mature Secondary Structure 
TEASRYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQA
CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCHHHHHHHHH
AAQARGADVYVTLEPCAHHGKTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAG
HHHCCCCEEEEEECCHHCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHCC
IHVQSGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGPQARRV
CCHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEECCCCCEEEECCCCCCCCCCHHHHHH
VHALRARHDAVMVGAGTARKDDPALTVRDLGTAWQPARVVISRRLDVPLMGVLARTATEV
HHHHHHCCCEEEEECCCCCCCCCCEEHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
PVILCHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSAL
CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHH
AASLFEADLVDELIGFTAGLAIGAEGLPSIGALGLSKLSRAPRYDLRSTQTVGPDVMHIW
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
ERAQP
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]