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The map label for this gene is sdhC [H]

Identifier: 110678932

GI number: 110678932

Start: 1566662

End: 1567045

Strand: Direct

Name: sdhC [H]

Synonym: RD1_1626

Alternate gene names: 110678932

Gene position: 1566662-1567045 (Clockwise)

Preceding gene: 110678931

Following gene: 110678933

Centisome position: 37.91

GC content: 56.25

Gene sequence:

>384_bases
ATGGCTGATGTGAATCGGGGCAACCGTCCCTTGTCACCGCATCTGACAATCTATCGCCCGCAACTGACGTCGATGACCTC
CATCTTGACGCGGATCACGGGAAACGCACTGCTGATTTCCTCCCTGCTGGTCGTGTGGTGGTTTCTCGCAGCGGCAACGT
CGCCTGAATACTTCGCGGTTGCCAATGGCGTGCTGACCAGCTGGTTCGGTGATCTGGTCATGACCTTGTCGCTCTGGGGG
CTGTGGTATCATACGCTTGCCGGTGTGCGGCATCTGATCTGGGACCAGGGCATCGGCCTTGACATCGAAACCGCCTATAA
ACTGGGCTATGCGGTGATCGGCGGATCCTTTGTACTGACACTTCTGACCATCATCTTGATCTAA

Upstream 100 bases:

>100_bases
GTTCAGATCGCGCCAATTTAACGCGGTTTTTGAACGATGCCGCAGGTGACACAGACTATAATAGGAGTAAAAGAATACCA
AGGATCGAAAGGAACATATC

Downstream 100 bases:

>100_bases
GGGGCCTGTGATGAGCTATCTAACCGACCGTAAGCGCGCTGTGGGACTTGGATCTGCCAAGTCGGGGACGGAACACCACT
GGTCGATGACGGTCAGTTCG

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MADVNRGNRPLSPHLTIYRPQLTSMTSILTRITGNALLISSLLVVWWFLAAATSPEYFAVANGVLTSWFGDLVMTLSLWG
LWYHTLAGVRHLIWDQGIGLDIETAYKLGYAVIGGSFVLTLLTIILI

Sequences:

>Translated_127_residues
MADVNRGNRPLSPHLTIYRPQLTSMTSILTRITGNALLISSLLVVWWFLAAATSPEYFAVANGVLTSWFGDLVMTLSLWG
LWYHTLAGVRHLIWDQGIGLDIETAYKLGYAVIGGSFVLTLLTIILI
>Mature_126_residues
ADVNRGNRPLSPHLTIYRPQLTSMTSILTRITGNALLISSLLVVWWFLAAATSPEYFAVANGVLTSWFGDLVMTLSLWGL
WYHTLAGVRHLIWDQGIGLDIETAYKLGYAVIGGSFVLTLLTIILI

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Drosophila melanogaster, GI45550736, Length=126, Percent_Identity=39.6825396825397, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14036; Mature: 13904

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVNRGNRPLSPHLTIYRPQLTSMTSILTRITGNALLISSLLVVWWFLAAATSPEYFAV
CCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHH
ANGVLTSWFGDLVMTLSLWGLWYHTLAGVRHLIWDQGIGLDIETAYKLGYAVIGGSFVLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LLTIILI
HHHHHHC
>Mature Secondary Structure 
ADVNRGNRPLSPHLTIYRPQLTSMTSILTRITGNALLISSLLVVWWFLAAATSPEYFAV
CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHH
ANGVLTSWFGDLVMTLSLWGLWYHTLAGVRHLIWDQGIGLDIETAYKLGYAVIGGSFVLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LLTIILI
HHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA