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The map label for this gene is sdhD [H]

Identifier: 110678933

GI number: 110678933

Start: 1567056

End: 1567427

Strand: Direct

Name: sdhD [H]

Synonym: RD1_1627

Alternate gene names: 110678933

Gene position: 1567056-1567427 (Clockwise)

Preceding gene: 110678932

Following gene: 110678934

Centisome position: 37.91

GC content: 57.8

Gene sequence:

>372_bases
ATGAGCTATCTAACCGACCGTAAGCGCGCTGTGGGACTTGGATCTGCCAAGTCGGGGACGGAACACCACTGGTCGATGAC
GGTCAGTTCGGGGGCGCTGCTCATTCTCATCCCGCTGTTCGTCTTTACCTTTGGCCCGATGCTGGGCGCATCCTACGACG
AAGTCACCGCCTATTTCGCCCGCCCGTTCCCGGCTGTGATTGCCGGTTTGACGATCATTGTCACGTTCAAGCACTTTGCG
GGGGGCGTTCAGGCGCTACTTGAAGACTACGTGCACGGTGTAGCGCAGAAGGTGGCGATCGTGGCAATGACATGCGTCAG
TTATGCGGCCATGGGTTTTGGCCTTTACGCAGTTGTGCGGCTCGCATTGTAA

Upstream 100 bases:

>100_bases
GGCCTTGACATCGAAACCGCCTATAAACTGGGCTATGCGGTGATCGGCGGATCCTTTGTACTGACACTTCTGACCATCAT
CTTGATCTAAGGGGCCTGTG

Downstream 100 bases:

>100_bases
AAATTATTCCGGCGCGCGCCTGTGTGCCAGCTAGACTTCCGGGAGATACTCGATGGCTGAATACGAATATGAAACACATG
AATACGACGTTGTCGTCGTA

Product: hypothetical protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSYLTDRKRAVGLGSAKSGTEHHWSMTVSSGALLILIPLFVFTFGPMLGASYDEVTAYFARPFPAVIAGLTIIVTFKHFA
GGVQALLEDYVHGVAQKVAIVAMTCVSYAAMGFGLYAVVRLAL

Sequences:

>Translated_123_residues
MSYLTDRKRAVGLGSAKSGTEHHWSMTVSSGALLILIPLFVFTFGPMLGASYDEVTAYFARPFPAVIAGLTIIVTFKHFA
GGVQALLEDYVHGVAQKVAIVAMTCVSYAAMGFGLYAVVRLAL
>Mature_122_residues
SYLTDRKRAVGLGSAKSGTEHHWSMTVSSGALLILIPLFVFTFGPMLGASYDEVTAYFARPFPAVIAGLTIIVTFKHFAG
GVQALLEDYVHGVAQKVAIVAMTCVSYAAMGFGLYAVVRLAL

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13120; Mature: 12988

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLTDRKRAVGLGSAKSGTEHHWSMTVSSGALLILIPLFVFTFGPMLGASYDEVTAYFA
CCCCCCCHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RPFPAVIAGLTIIVTFKHFAGGVQALLEDYVHGVAQKVAIVAMTCVSYAAMGFGLYAVVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAL
HCC
>Mature Secondary Structure 
SYLTDRKRAVGLGSAKSGTEHHWSMTVSSGALLILIPLFVFTFGPMLGASYDEVTAYFA
CCCCCCHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RPFPAVIAGLTIIVTFKHFAGGVQALLEDYVHGVAQKVAIVAMTCVSYAAMGFGLYAVVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAL
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA