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The map label for this gene is ycjN [C]

Identifier: 110678798

GI number: 110678798

Start: 1409887

End: 1411194

Strand: Reverse

Name: ycjN [C]

Synonym: RD1_1486

Alternate gene names: 110678798

Gene position: 1411194-1409887 (Counterclockwise)

Preceding gene: 110678799

Following gene: 110678797

Centisome position: 34.14

GC content: 57.72

Gene sequence:

>1308_bases
ATGTCACGTATAACAACACTTTGCACTGCGACGGCGATGGCACTTGTCATGTCTGGCGGTGCATTTGCCGAAAATTTGGT
AATTGCCACAGTCAACAACGGCGACATGATCCGCATGCAGGGTCTGACACAGGATTTCACTGACAAGACCGGCCACACCG
TGGAGTGGGTCACATTGGAGGAAAACGTCCTCCGTCAGCGTGTCACAACAGATATCGCGGCCAAGGGCGGATCCTTTGAT
ATCATGACAATCGGCATGTATGAAACGCCGATCTGGGGCGCCAATGGCTGGCTGGTCCCTCTCGATGATTTTTCCGCCGA
ATATGACGTGGATGACATTCTGCCCGCAATGCGCGGCGGCCTCAGCCACGACGGCACGCTGTACGCGGCGCCATTTTATG
GGGAAAGCTCCATGATCATGTACCGCACCGACCTGATGGAAGCGGCGGGGCTCGAAATGCCGACCGCACCCACATGGCAG
TTCATTCGTGAGGCGGCGGCGGCGATGACCGATCGTGACGCCGACATCAACGGCATCTGCCTACGCGGCAAGGCCGGTTG
GGGCGAAGGTGGCGCGTTCATCACCGTGACGGCGAACTCTTTCGGGGCACGCTGGTTTGATGAGGAATGGAATGCACAGT
TCGACCAGCCAGAGTGGAAGGAAGCGCTGACCTTCTTCACCGAAATGATGTCTGAATCCGGCCCGACCGGCTATGCGACC
AACGGTTTCAACGAGAACCTGAACCTGTTCCAGCAGGGCAAATGCGGCATGTGGATCGACGCGACCGTTGCGGCGTCCTT
CGTGACCAACCCGAACGATTCAACCGTTGCGGACAGCGTCGGCTTTGCGCTGGCACCAAACGCTGAAGGCGTTGAGAAGC
GTGCGAACTGGCTCTGGGCCTGGGCGCTGGCGATCCCTGCCGGTACGCAGAAAGAAGATGCCGCCAAAGAGTTCATCGAA
TGGGCAACCTCGAAAGAATACATCGAACTGGTCGCTGCGAACGAAGGTTGGGCGAACGTCCCTCCCGGTGCGCGCACATC
GCTCTATGAAAACCCGAATTACAAAGAGGTTCCCTTCGCGCAGATGACACTGGATTCGATCCTTGCGGCTGACCCCAGCA
ACCCGACCGTCAAACCAGTGCCTTACGTAGGTATCCAGTTTGCGGCGATCCCTGAGTTTGCCGGTATCGCAACTGAAGTC
AGCCAGGAATTCTCGGCTGTCTATGCAGGTCAACAGACCGTGGAAGAAGCGCTTGCCAAAGCACAGGCGCTGACCAACGA
CGCGATGGAAGCTGCTGGCTACCGCTAA

Upstream 100 bases:

>100_bases
ATGCGCCTCGCCTTTTATTTACGCGCGATAACTTTTAATTGACTTCGCGCCATCTCCCCTGTTAGTGATTAACCATCATC
CAACCAGGAGGAGTTTCGGG

Downstream 100 bases:

>100_bases
GCGCTCCTCCTGACCCGGGGGGCACAATTCCCCCATGTGCTCCCCGGGTTTCTTCTCTTTCAATATTGCAGCTCCGTTTT
AAGATCACCCACCGGCGATC

Product: periplasmic sorbitol-binding protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSRITTLCTATAMALVMSGGAFAENLVIATVNNGDMIRMQGLTQDFTDKTGHTVEWVTLEENVLRQRVTTDIAAKGGSFD
IMTIGMYETPIWGANGWLVPLDDFSAEYDVDDILPAMRGGLSHDGTLYAAPFYGESSMIMYRTDLMEAAGLEMPTAPTWQ
FIREAAAAMTDRDADINGICLRGKAGWGEGGAFITVTANSFGARWFDEEWNAQFDQPEWKEALTFFTEMMSESGPTGYAT
NGFNENLNLFQQGKCGMWIDATVAASFVTNPNDSTVADSVGFALAPNAEGVEKRANWLWAWALAIPAGTQKEDAAKEFIE
WATSKEYIELVAANEGWANVPPGARTSLYENPNYKEVPFAQMTLDSILAADPSNPTVKPVPYVGIQFAAIPEFAGIATEV
SQEFSAVYAGQQTVEEALAKAQALTNDAMEAAGYR

Sequences:

>Translated_435_residues
MSRITTLCTATAMALVMSGGAFAENLVIATVNNGDMIRMQGLTQDFTDKTGHTVEWVTLEENVLRQRVTTDIAAKGGSFD
IMTIGMYETPIWGANGWLVPLDDFSAEYDVDDILPAMRGGLSHDGTLYAAPFYGESSMIMYRTDLMEAAGLEMPTAPTWQ
FIREAAAAMTDRDADINGICLRGKAGWGEGGAFITVTANSFGARWFDEEWNAQFDQPEWKEALTFFTEMMSESGPTGYAT
NGFNENLNLFQQGKCGMWIDATVAASFVTNPNDSTVADSVGFALAPNAEGVEKRANWLWAWALAIPAGTQKEDAAKEFIE
WATSKEYIELVAANEGWANVPPGARTSLYENPNYKEVPFAQMTLDSILAADPSNPTVKPVPYVGIQFAAIPEFAGIATEV
SQEFSAVYAGQQTVEEALAKAQALTNDAMEAAGYR
>Mature_434_residues
SRITTLCTATAMALVMSGGAFAENLVIATVNNGDMIRMQGLTQDFTDKTGHTVEWVTLEENVLRQRVTTDIAAKGGSFDI
MTIGMYETPIWGANGWLVPLDDFSAEYDVDDILPAMRGGLSHDGTLYAAPFYGESSMIMYRTDLMEAAGLEMPTAPTWQF
IREAAAAMTDRDADINGICLRGKAGWGEGGAFITVTANSFGARWFDEEWNAQFDQPEWKEALTFFTEMMSESGPTGYATN
GFNENLNLFQQGKCGMWIDATVAASFVTNPNDSTVADSVGFALAPNAEGVEKRANWLWAWALAIPAGTQKEDAAKEFIEW
ATSKEYIELVAANEGWANVPPGARTSLYENPNYKEVPFAQMTLDSILAADPSNPTVKPVPYVGIQFAAIPEFAGIATEVS
QEFSAVYAGQQTVEEALAKAQALTNDAMEAAGYR

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47238; Mature: 47107

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRITTLCTATAMALVMSGGAFAENLVIATVNNGDMIRMQGLTQDFTDKTGHTVEWVTLE
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCCHHCCCCCCEEEEEEEC
ENVLRQRVTTDIAAKGGSFDIMTIGMYETPIWGANGWLVPLDDFSAEYDVDDILPAMRGG
HHHHHHHHHHHHHCCCCCEEEEEEEEEECCEECCCCCEEECCCCCCCCCHHHHHHHHHCC
LSHDGTLYAAPFYGESSMIMYRTDLMEAAGLEMPTAPTWQFIREAAAAMTDRDADINGIC
CCCCCEEEEEEEECCCCEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
LRGKAGWGEGGAFITVTANSFGARWFDEEWNAQFDQPEWKEALTFFTEMMSESGPTGYAT
EECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
NGFNENLNLFQQGKCGMWIDATVAASFVTNPNDSTVADSVGFALAPNAEGVEKRANWLWA
CCCCCCCCCEECCCCCEEEEHHHHHHEECCCCCCCHHHCCCEEECCCCCCHHHHHCEEEE
WALAIPAGTQKEDAAKEFIEWATSKEYIELVAANEGWANVPPGARTSLYENPNYKEVPFA
EEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
QMTLDSILAADPSNPTVKPVPYVGIQFAAIPEFAGIATEVSQEFSAVYAGQQTVEEALAK
HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AQALTNDAMEAAGYR
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRITTLCTATAMALVMSGGAFAENLVIATVNNGDMIRMQGLTQDFTDKTGHTVEWVTLE
CHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCCHHCCCCCCEEEEEEEC
ENVLRQRVTTDIAAKGGSFDIMTIGMYETPIWGANGWLVPLDDFSAEYDVDDILPAMRGG
HHHHHHHHHHHHHCCCCCEEEEEEEEEECCEECCCCCEEECCCCCCCCCHHHHHHHHHCC
LSHDGTLYAAPFYGESSMIMYRTDLMEAAGLEMPTAPTWQFIREAAAAMTDRDADINGIC
CCCCCEEEEEEEECCCCEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
LRGKAGWGEGGAFITVTANSFGARWFDEEWNAQFDQPEWKEALTFFTEMMSESGPTGYAT
EECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
NGFNENLNLFQQGKCGMWIDATVAASFVTNPNDSTVADSVGFALAPNAEGVEKRANWLWA
CCCCCCCCCEECCCCCEEEEHHHHHHEECCCCCCCHHHCCCEEECCCCCCHHHHHCEEEE
WALAIPAGTQKEDAAKEFIEWATSKEYIELVAANEGWANVPPGARTSLYENPNYKEVPFA
EEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
QMTLDSILAADPSNPTVKPVPYVGIQFAAIPEFAGIATEVSQEFSAVYAGQQTVEEALAK
HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AQALTNDAMEAAGYR
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]