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The map label for this gene is ycjO [C]

Identifier: 110678797

GI number: 110678797

Start: 1408901

End: 1409767

Strand: Reverse

Name: ycjO [C]

Synonym: RD1_1485

Alternate gene names: 110678797

Gene position: 1409767-1408901 (Counterclockwise)

Preceding gene: 110678798

Following gene: 110678796

Centisome position: 34.11

GC content: 56.86

Gene sequence:

>867_bases
ATGGCAACCCAACACTCTCGATCAGCGGCCCGCCTGATGATGGCCCCTGCGGTCGTCCTGCTCCTCGGCTGGATGCTTGT
TCCCCTGATCATGACCCTGACGTTCTCGTTCAAACAATACCTGCCGCTTCGGGGCGGTGATCTTGGATGGGTTGGTTTTG
ACAATTATGTTCGGTTTGTAAGTTCCAGTGCCTTTTGGCCTTCTGTTGTCGCCACCCTGACGATTGTGGGTGGTGTTCTT
ATCATCACTGTTGTGCTTGGCATCCTGCTGGCCATCCTGCTCAACCAGCCCATGTGGGGACAGGGGATCGTGCGCATCCT
CGTGATCGCCCCGTTCTTTGTCATGCCCACCGTCTCGGCGCTGGTCTGGAAGAACATGTTCATGGATCCGGTGAATGGAT
TGTTTGCGCATTTATGGAAGTTCTTCGGCGCGGAGCCGGTCGCCTGGCTTTCGGAGGCCTCCATGCCCTCGATCGTAATG
ATCGTATCCTGGCAATGGCTACCCTTTGCGACGCTGATCCTGCTGACGGCCATTCAGTCGCTCGACAGCGAGCAGCTGGA
AGCCGCCGAAATGGACGGTGCCCCGCCGATCAAGCGCTTTGGCTACATCATCCTGCCACACCTTGGCCGTGCGATCACGA
TTGTGATCCTGATCCAGACCATATTCTTGCTGGCGGTCTTTGCTGAGATCTTCGTGACAACAGGCGGCGCCTTTGGCACC
CGCACGCTGACCTACCTGATCTATCAGCGCGTGCTCGAAAGCCAGAACGTCGGACTTGGGTCTGCCGGTGGTGTCTATGC
AATCATTCTCGCCAATATCGTTGCCATCTTCCTGATGCGCATCGTCGGCAAGAATCTCGACGCGTGA

Upstream 100 bases:

>100_bases
GGGCACAATTCCCCCATGTGCTCCCCGGGTTTCTTCTCTTTCAATATTGCAGCTCCGTTTTAAGATCACCCACCGGCGAT
CAACACAGGAGGTATGCCCC

Downstream 100 bases:

>100_bases
GGAGGACATAATGGCCCGCGCAGTTACACAACAACGTAAGCTCATCAATACCGCACTGGCATGGGGTATCGGTCTGCTGA
TTTTCTTTCCGATCCTCTGG

Product: sugar ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MATQHSRSAARLMMAPAVVLLLGWMLVPLIMTLTFSFKQYLPLRGGDLGWVGFDNYVRFVSSSAFWPSVVATLTIVGGVL
IITVVLGILLAILLNQPMWGQGIVRILVIAPFFVMPTVSALVWKNMFMDPVNGLFAHLWKFFGAEPVAWLSEASMPSIVM
IVSWQWLPFATLILLTAIQSLDSEQLEAAEMDGAPPIKRFGYIILPHLGRAITIVILIQTIFLLAVFAEIFVTTGGAFGT
RTLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDA

Sequences:

>Translated_288_residues
MATQHSRSAARLMMAPAVVLLLGWMLVPLIMTLTFSFKQYLPLRGGDLGWVGFDNYVRFVSSSAFWPSVVATLTIVGGVL
IITVVLGILLAILLNQPMWGQGIVRILVIAPFFVMPTVSALVWKNMFMDPVNGLFAHLWKFFGAEPVAWLSEASMPSIVM
IVSWQWLPFATLILLTAIQSLDSEQLEAAEMDGAPPIKRFGYIILPHLGRAITIVILIQTIFLLAVFAEIFVTTGGAFGT
RTLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDA
>Mature_287_residues
ATQHSRSAARLMMAPAVVLLLGWMLVPLIMTLTFSFKQYLPLRGGDLGWVGFDNYVRFVSSSAFWPSVVATLTIVGGVLI
ITVVLGILLAILLNQPMWGQGIVRILVIAPFFVMPTVSALVWKNMFMDPVNGLFAHLWKFFGAEPVAWLSEASMPSIVMI
VSWQWLPFATLILLTAIQSLDSEQLEAAEMDGAPPIKRFGYIILPHLGRAITIVILIQTIFLLAVFAEIFVTTGGAFGTR
TLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=267, Percent_Identity=28.4644194756554, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1789861, Length=289, Percent_Identity=25.6055363321799, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790465, Length=257, Percent_Identity=25.2918287937743, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31559; Mature: 31428

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQHSRSAARLMMAPAVVLLLGWMLVPLIMTLTFSFKQYLPLRGGDLGWVGFDNYVRFV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
SSSAFWPSVVATLTIVGGVLIITVVLGILLAILLNQPMWGQGIVRILVIAPFFVMPTVSA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMDPVNGLFAHLWKFFGAEPVAWLSEASMPSIVMIVSWQWLPFATLILLTAIQS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH
LDSEQLEAAEMDGAPPIKRFGYIILPHLGRAITIVILIQTIFLLAVFAEIFVTTGGAFGT
CCHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
RTLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATQHSRSAARLMMAPAVVLLLGWMLVPLIMTLTFSFKQYLPLRGGDLGWVGFDNYVRFV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
SSSAFWPSVVATLTIVGGVLIITVVLGILLAILLNQPMWGQGIVRILVIAPFFVMPTVSA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMDPVNGLFAHLWKFFGAEPVAWLSEASMPSIVMIVSWQWLPFATLILLTAIQS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH
LDSEQLEAAEMDGAPPIKRFGYIILPHLGRAITIVILIQTIFLLAVFAEIFVTTGGAFGT
CCHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
RTLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]