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The map label for this gene is ycjP [C]

Identifier: 110678796

GI number: 110678796

Start: 1408060

End: 1408890

Strand: Reverse

Name: ycjP [C]

Synonym: RD1_1484

Alternate gene names: 110678796

Gene position: 1408890-1408060 (Counterclockwise)

Preceding gene: 110678797

Following gene: 110678795

Centisome position: 34.09

GC content: 55.48

Gene sequence:

>831_bases
ATGGCCCGCGCAGTTACACAACAACGTAAGCTCATCAATACCGCACTGGCATGGGGTATCGGTCTGCTGATTTTCTTTCC
GATCCTCTGGACGATCCTGACCAGCTTCAAAACCGAAGCCACAGCGATTGCGGATCCACCGGTGTTCCTCGCCTTTGACT
GGACGCTGGAAAACTACGAAGCCGTGATGGAGCGGTCAAACTACGCCAAATTCCTGTGGAATTCGATTATCATCGCGGGC
GGTTCAACCATTCTGGGCATCATCGTCGCGGTGCCCGCAGCATGGTCCATGGCCTTTGTGCCCTCCAAGCGGACCAAGGA
CATCCTGCTTTGGATGTTGTCCACCAAAATGTTGCCAGCGGTGGGTGTGCTTTATCCGATCTACCTGATCTTCATCAATC
TCGGAATTCTGGACAGCCGTGTCGGTCTGGTCATCGTTCTGATGCTGATGAACCTGCCAATCATCGTCTGGATGCTTTAC
ACTTATTTCCGCGAGATTCCGGGCGAAATTCTGGAAGCGGCGCGGATGGACGGGGCCTCCCTCAAAGAGGAAATCCTCTA
TGTGCTGACCCCGATGGCCATTCCGGGCATCGCCTCGACCGTGCTGCTGAACTTTATCCTCGCGTGGAACGAAGCTTTCT
GGACCCTGAACCTCACAGCGGCCAATGCGGCACCTCTGACGGCTTTCATCGCAAGCTACTCCAGCCCGGAGGGATTGTTT
TTCGCCAAGCTCAGTGCGGCCTCGACCATGGCCATCGCACCGATCCTCATCCTCGGCTGGTTCAGCCAGAAACAACTTGT
CAGCGGCCTCACCTTCGGCGCCGTAAAATAA

Upstream 100 bases:

>100_bases
GGGTCTGCCGGTGGTGTCTATGCAATCATTCTCGCCAATATCGTTGCCATCTTCCTGATGCGCATCGTCGGCAAGAATCT
CGACGCGTGAGGAGGACATA

Downstream 100 bases:

>100_bases
GGAATTTGACCAATGGGACAAATCAAACTCAACCAGGTGACCAAAAGCTTCGGTGAAACTCAGGTCATCCCACCGCTGGA
TCTGACCATCGAAGATGGCG

Product: sugar ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MARAVTQQRKLINTALAWGIGLLIFFPILWTILTSFKTEATAIADPPVFLAFDWTLENYEAVMERSNYAKFLWNSIIIAG
GSTILGIIVAVPAAWSMAFVPSKRTKDILLWMLSTKMLPAVGVLYPIYLIFINLGILDSRVGLVIVLMLMNLPIIVWMLY
TYFREIPGEILEAARMDGASLKEEILYVLTPMAIPGIASTVLLNFILAWNEAFWTLNLTAANAAPLTAFIASYSSPEGLF
FAKLSAASTMAIAPILILGWFSQKQLVSGLTFGAVK

Sequences:

>Translated_276_residues
MARAVTQQRKLINTALAWGIGLLIFFPILWTILTSFKTEATAIADPPVFLAFDWTLENYEAVMERSNYAKFLWNSIIIAG
GSTILGIIVAVPAAWSMAFVPSKRTKDILLWMLSTKMLPAVGVLYPIYLIFINLGILDSRVGLVIVLMLMNLPIIVWMLY
TYFREIPGEILEAARMDGASLKEEILYVLTPMAIPGIASTVLLNFILAWNEAFWTLNLTAANAAPLTAFIASYSSPEGLF
FAKLSAASTMAIAPILILGWFSQKQLVSGLTFGAVK
>Mature_275_residues
ARAVTQQRKLINTALAWGIGLLIFFPILWTILTSFKTEATAIADPPVFLAFDWTLENYEAVMERSNYAKFLWNSIIIAGG
STILGIIVAVPAAWSMAFVPSKRTKDILLWMLSTKMLPAVGVLYPIYLIFINLGILDSRVGLVIVLMLMNLPIIVWMLYT
YFREIPGEILEAARMDGASLKEEILYVLTPMAIPGIASTVLLNFILAWNEAFWTLNLTAANAAPLTAFIASYSSPEGLFF
AKLSAASTMAIAPILILGWFSQKQLVSGLTFGAVK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=278, Percent_Identity=29.136690647482, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790464, Length=211, Percent_Identity=32.7014218009479, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789860, Length=211, Percent_Identity=26.5402843601896, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30406; Mature: 30274

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAVTQQRKLINTALAWGIGLLIFFPILWTILTSFKTEATAIADPPVFLAFDWTLENYE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCHHHHH
AVMERSNYAKFLWNSIIIAGGSTILGIIVAVPAAWSMAFVPSKRTKDILLWMLSTKMLPA
HHHHHCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHH
VGVLYPIYLIFINLGILDSRVGLVIVLMLMNLPIIVWMLYTYFREIPGEILEAARMDGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCH
LKEEILYVLTPMAIPGIASTVLLNFILAWNEAFWTLNLTAANAAPLTAFIASYSSPEGLF
HHHHHHHHHCCHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCCCCCCEE
FAKLSAASTMAIAPILILGWFSQKQLVSGLTFGAVK
EEEHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC
>Mature Secondary Structure 
ARAVTQQRKLINTALAWGIGLLIFFPILWTILTSFKTEATAIADPPVFLAFDWTLENYE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCHHHHH
AVMERSNYAKFLWNSIIIAGGSTILGIIVAVPAAWSMAFVPSKRTKDILLWMLSTKMLPA
HHHHHCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHH
VGVLYPIYLIFINLGILDSRVGLVIVLMLMNLPIIVWMLYTYFREIPGEILEAARMDGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCH
LKEEILYVLTPMAIPGIASTVLLNFILAWNEAFWTLNLTAANAAPLTAFIASYSSPEGLF
HHHHHHHHHCCHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCCCCCCEE
FAKLSAASTMAIAPILILGWFSQKQLVSGLTFGAVK
EEEHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]