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The map label for this gene is ntaR [H]

Identifier: 110678791

GI number: 110678791

Start: 1403947

End: 1404594

Strand: Direct

Name: ntaR [H]

Synonym: RD1_1479

Alternate gene names: 110678791

Gene position: 1403947-1404594 (Clockwise)

Preceding gene: 110678785

Following gene: 110678802

Centisome position: 33.97

GC content: 58.33

Gene sequence:

>648_bases
ATGGAGCTGAAGCGCGCAGAACAGATTGCAGACTCCCTTGAACAACTCGTTTTCCAAGGGAAATACAAAGACGGTCAACG
GCTTGACGAGATCAAGCTCGCGGCGCGTTTCAATGTATCCCGCACCCCGATCCGCGAAGCGCTGCAGCGGCTGGTCATGT
CCGGCATGGCCGAACAAATACCGCGCAAAGGCGTTTTCGTGCGCCAGCCCGGCCCTGTGGAATTGCTGGAAATGTTTGAA
ACCATGGCCGAACTTGAGGCGGCCTGTGGTCGGTTTGCTGCGGTGCGAATGACGGATGAGGGATTGGAGCGACTTGCAGA
TGCGAACGTCCGGTGCAAGGCAGCGGTCGAAAAGAAAGACGCCGCCGGATATTATCAGGAGAACGAGGCGTTTCATCGGG
AAATCTATCACGGGGCCACGAATGCCTACCTGCGAAACGAAGCCTTGCGGCTGCAGAACCGGCTCAAGCCTTATCGCCGG
GTGCAGTTGCGCTTCAGGGGGCGCATGGCCCAGTCGCTCGCCGAACATGAAGAGATCATCGAGGCGCTTCGGTCCGGAGA
GGCTGAGCTTGCCGCAACACTGCTGCGCGCCCACGTCACGGTTCAAGGTGAGAAATTCCAGCAACTGATGGCGGGACTGA
AGAACTAG

Upstream 100 bases:

>100_bases
CAGTAATCCACCATTGCTCATTTGGCATTCCCAGTCAACATTCTTGTATACAATATAATAAATATTGCGTTTTGTGACGT
ATTTATAGTATCCGTTTCCT

Downstream 100 bases:

>100_bases
GTCCGGTTATCAAACCGCGACGGGTGCCAATTCGAAATCGGGCGGGGCTGTCCTCATCAGTCAAAAACATCCTTGCCTCG
GGCTGTTGCGATACTTCGGT

Product: GntR family transcription regulator putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MELKRAEQIADSLEQLVFQGKYKDGQRLDEIKLAARFNVSRTPIREALQRLVMSGMAEQIPRKGVFVRQPGPVELLEMFE
TMAELEAACGRFAAVRMTDEGLERLADANVRCKAAVEKKDAAGYYQENEAFHREIYHGATNAYLRNEALRLQNRLKPYRR
VQLRFRGRMAQSLAEHEEIIEALRSGEAELAATLLRAHVTVQGEKFQQLMAGLKN

Sequences:

>Translated_215_residues
MELKRAEQIADSLEQLVFQGKYKDGQRLDEIKLAARFNVSRTPIREALQRLVMSGMAEQIPRKGVFVRQPGPVELLEMFE
TMAELEAACGRFAAVRMTDEGLERLADANVRCKAAVEKKDAAGYYQENEAFHREIYHGATNAYLRNEALRLQNRLKPYRR
VQLRFRGRMAQSLAEHEEIIEALRSGEAELAATLLRAHVTVQGEKFQQLMAGLKN
>Mature_215_residues
MELKRAEQIADSLEQLVFQGKYKDGQRLDEIKLAARFNVSRTPIREALQRLVMSGMAEQIPRKGVFVRQPGPVELLEMFE
TMAELEAACGRFAAVRMTDEGLERLADANVRCKAAVEKKDAAGYYQENEAFHREIYHGATNAYLRNEALRLQNRLKPYRR
VQLRFRGRMAQSLAEHEEIIEALRSGEAELAATLLRAHVTVQGEKFQQLMAGLKN

Specific function: Probable regulator for the expression of the NTA monooxygenase subunits [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=211, Percent_Identity=27.9620853080569, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24521; Mature: 24521

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKRAEQIADSLEQLVFQGKYKDGQRLDEIKLAARFNVSRTPIREALQRLVMSGMAEQI
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
PRKGVFVRQPGPVELLEMFETMAELEAACGRFAAVRMTDEGLERLADANVRCKAAVEKKD
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHCCCCEEHHHHHHHH
AAGYYQENEAFHREIYHGATNAYLRNEALRLQNRLKPYRRVQLRFRGRMAQSLAEHEEII
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
EALRSGEAELAATLLRAHVTVQGEKFQQLMAGLKN
HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MELKRAEQIADSLEQLVFQGKYKDGQRLDEIKLAARFNVSRTPIREALQRLVMSGMAEQI
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
PRKGVFVRQPGPVELLEMFETMAELEAACGRFAAVRMTDEGLERLADANVRCKAAVEKKD
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHCCCCEEHHHHHHHH
AAGYYQENEAFHREIYHGATNAYLRNEALRLQNRLKPYRRVQLRFRGRMAQSLAEHEEII
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
EALRSGEAELAATLLRAHVTVQGEKFQQLMAGLKN
HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA