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The map label for this gene is cph1 [H]

Identifier: 110678802

GI number: 110678802

Start: 1415207

End: 1417150

Strand: Direct

Name: cph1 [H]

Synonym: RD1_1490

Alternate gene names: 110678802

Gene position: 1415207-1417150 (Clockwise)

Preceding gene: 110678791

Following gene: 110678803

Centisome position: 34.24

GC content: 52.78

Gene sequence:

>1944_bases
ATGTTTTCGCAAGAAAGATATGCAGTGGCGGGTGGAATCGTTCTTCGCCTTCGCGTTGTGTTCTTGTCGATTTTCCTGAT
CCTTCTCGCGACATTGATTGTCGGAACCAGCCAGATAAAAATCCAGAAAGCGTCCGTAAAACAGCTGACGGAGTCATCCG
TGCCTGTGTTTGTGCGTGCCGAAGAGATGGTGCGCAACCTGACGCAACTCCTGTTGCTGGTTCAGAAAATTGACTCCGTC
AGCAGTCTGGACGAATTGCCGCCTTTATCAGAGCAGCTTCAGTCCAAACTCGCCATTCTACGCTCGAACAAAACAAACAT
TTCAGAGTCGCCGATCTCCGTCGAGATCACAGACAGCATACTGGCCGCGCTGAGCAAAATCGACGTCGGGTTTTCCAAGG
TTCTGGCGGAAAAAAAGGAAATCATCCTGCATGAACAGAACCTGTTGCAACAGGTCGAATCCCTCGAAGAGGTGCGGGAA
GATATCCGCGCTTCGTTAGAGGATCTCTCTTACAGCGTCGCCCTGTCAGAAGGCGAAAACATACAGTACTTTCAGCTGCC
CATTCCTGAAAACACCCAGACACAATACCGGCTGAACTTGGTTCTCGCGACGACGATCACCAAGATTTCGTTGGACGTTG
AATCCGTCGTCGATACAGCCATTGGACTGCGAAACATACCTGACGCGGACCAGCTTTACATCACCCAGCAAGCGTTGCGG
GCAAAACTGCGCGGGATTGTCGTTTTGATCGGACAGTTGGGGGAAAGCAGCTACCGAACTGAGTTGGCGCGGTCGGTTGT
TGATATACGCAATCTGCTTTTCGGTGCGGGGGGCATGGTCAACGAAGTCGCTGAACTATTGGCGCAAAGGGCTTCGCTGG
AAACCGAGAGAAGCGCACAGTTCGTGCCGATAGAAACGGTCTCGCGGCTGTCTGATCAGCTGACAAAAACGGCGCAACGC
GAAATTGACCTCGCGGCTCAGAAACTCAAAGCGATTACAGACAACATGACCATCGTGTTCACGCTTGCTGCCGTCCTGTC
CTTTTTTGCAATTCTCTGGACGGTCGTTTTCGTCGTTGAAAAGCAAATCAATCAGAGAATGGCGGGGCTGACCCGCTCTG
TTCTGGCTATCGCAGGGGGTGAGACGGATCACGAGGTGGAAGTGTCGGGGCAGGATGAGCTTGGGAAAATGGCCAAAGCT
CTTGAGGTGTTCAAGCTTAACGCGAAAGAGCTGCACCGTTCCAATGCCGAGTTGGAAAAGTTTGCCTATGTTGCAGCACA
TGACCTGCGTTCCCCTCTGCGCGCAATTCAGGACCTGACCGAATGGACGTTGGAGGATGAGGAAACCGTGCTTTCTGCCG
ATGGGTTGGAAAACATGACGCTCTTGCAAAAACGAACGCTCCGGTTGAACAACCTGCTTTCCGACCTTCTCGAATACGCG
CGCGCAGGTCAGGAAAACGACGATCTGATTCACGTTTCTCTTCGGGAAGTCGTTATTGAAACGGCCGAACTGCTGGACCC
TGAGAAACGGTTTCAGATCAGCTTTCAGGGCACCTGCGACAGGGTCGTCGTCTTCGCGACGCCCGTCAGACAAATCCTGC
TGAACCTGATCAACAACGCGATGAAACATCACGACAGGGAAAAAGGAAAGATAACCGTGACCACACACTGCGATGCGGGT
CGGATCATTTTCACAGTGGAAGATGACGGCCCCGGTATCCTGCCGCAGTACCATGGCCGCATCTTTGGTCTCTTTCAGAC
ACTGAGGCCACGCGATGAGGTGGAAGGCAGTGGACTTGGCCTCGCCATCATCAGCAAACTTTTGGCGCATTACAAAGGCA
CCATCAGTGTGACCTCAGACCCGGAAATCCGCCGCGGAACCATCTTCACCTTTGATATGCCGGAGATGTCCGCAGACATG
AAAGCACCCAATCTGGCTGCTTAG

Upstream 100 bases:

>100_bases
GGAGCGCACTGAGCGGAGCATTATAGAAGATCATTAAGGCTCCATTAATTCTCAAAGGCTACCGTCGTGCAGGGCGCGTC
GCCTTACAGGAAATACCAAG

Downstream 100 bases:

>100_bases
ACCCCCCTGGAAGGCAAAAATATGGATGCTGAAGTACAAAAAACGGCAACACAGGTTGATACCGCGCCGGTGAAGTTCTT
GATCGTGGATGACGATCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 647; Mature: 647

Protein sequence:

>647_residues
MFSQERYAVAGGIVLRLRVVFLSIFLILLATLIVGTSQIKIQKASVKQLTESSVPVFVRAEEMVRNLTQLLLLVQKIDSV
SSLDELPPLSEQLQSKLAILRSNKTNISESPISVEITDSILAALSKIDVGFSKVLAEKKEIILHEQNLLQQVESLEEVRE
DIRASLEDLSYSVALSEGENIQYFQLPIPENTQTQYRLNLVLATTITKISLDVESVVDTAIGLRNIPDADQLYITQQALR
AKLRGIVVLIGQLGESSYRTELARSVVDIRNLLFGAGGMVNEVAELLAQRASLETERSAQFVPIETVSRLSDQLTKTAQR
EIDLAAQKLKAITDNMTIVFTLAAVLSFFAILWTVVFVVEKQINQRMAGLTRSVLAIAGGETDHEVEVSGQDELGKMAKA
LEVFKLNAKELHRSNAELEKFAYVAAHDLRSPLRAIQDLTEWTLEDEETVLSADGLENMTLLQKRTLRLNNLLSDLLEYA
RAGQENDDLIHVSLREVVIETAELLDPEKRFQISFQGTCDRVVVFATPVRQILLNLINNAMKHHDREKGKITVTTHCDAG
RIIFTVEDDGPGILPQYHGRIFGLFQTLRPRDEVEGSGLGLAIISKLLAHYKGTISVTSDPEIRRGTIFTFDMPEMSADM
KAPNLAA

Sequences:

>Translated_647_residues
MFSQERYAVAGGIVLRLRVVFLSIFLILLATLIVGTSQIKIQKASVKQLTESSVPVFVRAEEMVRNLTQLLLLVQKIDSV
SSLDELPPLSEQLQSKLAILRSNKTNISESPISVEITDSILAALSKIDVGFSKVLAEKKEIILHEQNLLQQVESLEEVRE
DIRASLEDLSYSVALSEGENIQYFQLPIPENTQTQYRLNLVLATTITKISLDVESVVDTAIGLRNIPDADQLYITQQALR
AKLRGIVVLIGQLGESSYRTELARSVVDIRNLLFGAGGMVNEVAELLAQRASLETERSAQFVPIETVSRLSDQLTKTAQR
EIDLAAQKLKAITDNMTIVFTLAAVLSFFAILWTVVFVVEKQINQRMAGLTRSVLAIAGGETDHEVEVSGQDELGKMAKA
LEVFKLNAKELHRSNAELEKFAYVAAHDLRSPLRAIQDLTEWTLEDEETVLSADGLENMTLLQKRTLRLNNLLSDLLEYA
RAGQENDDLIHVSLREVVIETAELLDPEKRFQISFQGTCDRVVVFATPVRQILLNLINNAMKHHDREKGKITVTTHCDAG
RIIFTVEDDGPGILPQYHGRIFGLFQTLRPRDEVEGSGLGLAIISKLLAHYKGTISVTSDPEIRRGTIFTFDMPEMSADM
KAPNLAA
>Mature_647_residues
MFSQERYAVAGGIVLRLRVVFLSIFLILLATLIVGTSQIKIQKASVKQLTESSVPVFVRAEEMVRNLTQLLLLVQKIDSV
SSLDELPPLSEQLQSKLAILRSNKTNISESPISVEITDSILAALSKIDVGFSKVLAEKKEIILHEQNLLQQVESLEEVRE
DIRASLEDLSYSVALSEGENIQYFQLPIPENTQTQYRLNLVLATTITKISLDVESVVDTAIGLRNIPDADQLYITQQALR
AKLRGIVVLIGQLGESSYRTELARSVVDIRNLLFGAGGMVNEVAELLAQRASLETERSAQFVPIETVSRLSDQLTKTAQR
EIDLAAQKLKAITDNMTIVFTLAAVLSFFAILWTVVFVVEKQINQRMAGLTRSVLAIAGGETDHEVEVSGQDELGKMAKA
LEVFKLNAKELHRSNAELEKFAYVAAHDLRSPLRAIQDLTEWTLEDEETVLSADGLENMTLLQKRTLRLNNLLSDLLEYA
RAGQENDDLIHVSLREVVIETAELLDPEKRFQISFQGTCDRVVVFATPVRQILLNLINNAMKHHDREKGKITVTTHCDAG
RIIFTVEDDGPGILPQYHGRIFGLFQTLRPRDEVEGSGLGLAIISKLLAHYKGTISVTSDPEIRRGTIFTFDMPEMSADM
KAPNLAA

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081816, Length=356, Percent_Identity=25, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI48994928, Length=233, Percent_Identity=27.4678111587983, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786912, Length=254, Percent_Identity=28.740157480315, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789808, Length=284, Percent_Identity=24.2957746478873, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1790861, Length=290, Percent_Identity=28.6206896551724, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786783, Length=234, Percent_Identity=29.9145299145299, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790436, Length=222, Percent_Identity=28.8288288288288, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1786600, Length=235, Percent_Identity=26.8085106382979, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 71907; Mature: 71907

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSQERYAVAGGIVLRLRVVFLSIFLILLATLIVGTSQIKIQKASVKQLTESSVPVFVRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCEEEEH
EEMVRNLTQLLLLVQKIDSVSSLDELPPLSEQLQSKLAILRSNKTNISESPISVEITDSI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHH
LAALSKIDVGFSKVLAEKKEIILHEQNLLQQVESLEEVREDIRASLEDLSYSVALSEGEN
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
IQYFQLPIPENTQTQYRLNLVLATTITKISLDVESVVDTAIGLRNIPDADQLYITQQALR
EEEEECCCCCCCCCEEEEEEEEEEHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AKLRGIVVLIGQLGESSYRTELARSVVDIRNLLFGAGGMVNEVAELLAQRASLETERSAQ
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHCCCC
FVPIETVSRLSDQLTKTAQREIDLAAQKLKAITDNMTIVFTLAAVLSFFAILWTVVFVVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KQINQRMAGLTRSVLAIAGGETDHEVEVSGQDELGKMAKALEVFKLNAKELHRSNAELEK
HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHCCCCHHHH
FAYVAAHDLRSPLRAIQDLTEWTLEDEETVLSADGLENMTLLQKRTLRLNNLLSDLLEYA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAGQENDDLIHVSLREVVIETAELLDPEKRFQISFQGTCDRVVVFATPVRQILLNLINNA
HCCCCCCCEEEHHHHHHHHHHHHHCCCCHHEEEEECCCCCEEEEEECHHHHHHHHHHHHH
MKHHDREKGKITVTTHCDAGRIIFTVEDDGPGILPQYHGRIFGLFQTLRPRDEVEGSGLG
HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHCCHHHHHHHHCCCCHHCCCCCCC
LAIISKLLAHYKGTISVTSDPEIRRGTIFTFDMPEMSADMKAPNLAA
HHHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFSQERYAVAGGIVLRLRVVFLSIFLILLATLIVGTSQIKIQKASVKQLTESSVPVFVRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCEEEEH
EEMVRNLTQLLLLVQKIDSVSSLDELPPLSEQLQSKLAILRSNKTNISESPISVEITDSI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHH
LAALSKIDVGFSKVLAEKKEIILHEQNLLQQVESLEEVREDIRASLEDLSYSVALSEGEN
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
IQYFQLPIPENTQTQYRLNLVLATTITKISLDVESVVDTAIGLRNIPDADQLYITQQALR
EEEEECCCCCCCCCEEEEEEEEEEHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AKLRGIVVLIGQLGESSYRTELARSVVDIRNLLFGAGGMVNEVAELLAQRASLETERSAQ
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHCCCC
FVPIETVSRLSDQLTKTAQREIDLAAQKLKAITDNMTIVFTLAAVLSFFAILWTVVFVVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KQINQRMAGLTRSVLAIAGGETDHEVEVSGQDELGKMAKALEVFKLNAKELHRSNAELEK
HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHCCCCHHHH
FAYVAAHDLRSPLRAIQDLTEWTLEDEETVLSADGLENMTLLQKRTLRLNNLLSDLLEYA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAGQENDDLIHVSLREVVIETAELLDPEKRFQISFQGTCDRVVVFATPVRQILLNLINNA
HCCCCCCCEEEHHHHHHHHHHHHHCCCCHHEEEEECCCCCEEEEEECHHHHHHHHHHHHH
MKHHDREKGKITVTTHCDAGRIIFTVEDDGPGILPQYHGRIFGLFQTLRPRDEVEGSGLG
HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHCCHHHHHHHHCCCCHHCCCCCCC
LAIISKLLAHYKGTISVTSDPEIRRGTIFTFDMPEMSADMKAPNLAA
HHHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]