| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is gatM [H]
Identifier: 110678785
GI number: 110678785
Start: 1396815
End: 1397939
Strand: Direct
Name: gatM [H]
Synonym: RD1_1472
Alternate gene names: 110678785
Gene position: 1396815-1397939 (Clockwise)
Preceding gene: 110678784
Following gene: 110678791
Centisome position: 33.8
GC content: 54.58
Gene sequence:
>1125_bases ATGCAAAAAACTGTCGTCAACAGCTGGAACGAATGGGACCCGCTCAAGCATGTGATTGTGGGCCGTGCCGATGACTGCCA TATCCCCCCTGAAGAGCCTGCTCTTGACGCGAAAGTGCCGGAGGACAGCGACATGCGCGGCCAGTGGGGGCGCAGGCCAC AAGAAACAATTGATCGCGCAAACGAACTTTTGGATAATTTCGCATCCATTCTCGAATCCCGTGGTATTCGGGTCGACCGT CCCACACCCATTGATCATTCCAAGCCCGCGATGACCCCTGATTTTCGAACAGAAAGCCAGTTCGGGTGCATGCCGCCGCG TGATGTTCTCCTGACAGTCGGCTCGGAAATGCTCGAAGCAACAATGTCCTATCGTTGTCGCTGGTTTGAATATCTGAACT ATCGACCGCTCATGCAGCAGTACTTCGAGCATGATCCCAACTTCCGCCATGAGAGTGCGCCCAAACCCCGTTTGACGGAT GCAGACTACCATCCCGATTACCTGAGCGACAAAATCGGTGTCGAAAAGCGCCTGAAATGGACCGCTGAAAAGTTCTTTGT GACCACCGAAGAAGAGCCGCTTTTTGATGCCGCCGATGTTCTGCGTTTCGGTCGCGATCTCGTGGTGCAGCATGGGTTTA CCACCAACCTGAAAGGTATTGAATGGCTGCGTCGGCACTTCCCCGACCATCGCGTTCACACCGTCAATTTTCCGGGCGAT CCCTATCCGATACATATCGATGCGACGTTCACACCGTTGCGCCCCGGTCTGATCCTCAACAATCCGCAGCGCCGCTTGCC CGAGGAACAGCGCAAGATGTACCGGGACAATGACTGGGAAATCGTGGATGCGGCACAGCCCGCCCATAACACGCCACCGC CACTGTGCTATTCGTCCACATGGCTTTCGATGAACGTGCTCGTGCTTGATCCCAAGACAGTCTGTGTGGAAAAATCGGAA GTTTACCAAGCTGAACAGATGGACAAGCTTGGCATGGAGGTCGTGGAGGTGGAGTTGCGTGACGCCTATGCTTTTGGCGG CGGCTTGCATTGCTGCACGGCGGATGTGTTCCGAGAGGGTACATGTGAAGATTATTTCCCGAATATGGACCAATCGTCGG TTTGA
Upstream 100 bases:
>100_bases CATGGCAGCACCTGCCAGAACGCAAGGCAATGCGCTTGCCAGTGCTTGTGTACAAATAAATTTAGTAATACGACTGCCGC ATCATTTTCGAGGTGGAAGT
Downstream 100 bases:
>100_bases ATGACGCCTCCGCTTGGCCCTGCGCCGGTTTCGCGGAAGGTAGGTTCGGTATGTATTCAGGGCCGCCGTCGCCAACGGTC GGCTGGCATGAGCGACATGT
Product: glycine amidinotransferase
Products: NA
Alternate protein names: Aminocyclitol amidinotransferase; ADT; Inosamine-phosphate amidinotransferase I [H]
Number of amino acids: Translated: 374; Mature: 374
Protein sequence:
>374_residues MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRANELLDNFASILESRGIRVDR PTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEATMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTD ADYHPDYLSDKIGVEKRLKWTAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSSTWLSMNVLVLDPKTVCVEKSE VYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREGTCEDYFPNMDQSSV
Sequences:
>Translated_374_residues MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRANELLDNFASILESRGIRVDR PTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEATMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTD ADYHPDYLSDKIGVEKRLKWTAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSSTWLSMNVLVLDPKTVCVEKSE VYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREGTCEDYFPNMDQSSV >Mature_374_residues MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRANELLDNFASILESRGIRVDR PTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEATMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTD ADYHPDYLSDKIGVEKRLKWTAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSSTWLSMNVLVLDPKTVCVEKSE VYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREGTCEDYFPNMDQSSV
Specific function: Catalyzes two non-consecutive transamidination reactions. It converts scyllo-inosamine 4-phosphate into N- amidino-scyllo-inosamine 4-phosphate and N1-amidinostreptamine 6- phosphate into streptidine 6-phosphate [H]
COG id: COG1834
COG function: function code E; N-Dimethylarginine dimethylaminohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amidinotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4503933, Length=365, Percent_Identity=43.013698630137, Blast_Score=275, Evalue=4e-74,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003198 [H]
Pfam domain/function: PF02274 Amidinotransf [H]
EC number: =2.1.4.2 [H]
Molecular weight: Translated: 43370; Mature: 43370
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRA CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH NELLDNFASILESRGIRVDRPTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEA HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH TMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTDADYHPDYLSDKIGVEKRLKW HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHH TAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD HHHHEEEECCCCCCHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCC PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSST CEEEEEECEECCCCCCEEECCCHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCC WLSMNVLVLDPKTVCVEKSEVYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREG EEEEEEEEECCCCEEECHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHCC TCEDYFPNMDQSSV CCHHHCCCCCCCCC >Mature Secondary Structure MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRA CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH NELLDNFASILESRGIRVDRPTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEA HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH TMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTDADYHPDYLSDKIGVEKRLKW HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHH TAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD HHHHEEEECCCCCCHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCC PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSST CEEEEEECEECCCCCCEEECCCHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCC WLSMNVLVLDPKTVCVEKSEVYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREG EEEEEEEEECCCCEEECHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHCC TCEDYFPNMDQSSV CCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3118332; 3029728; 1654502; 9922132 [H]