Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is gatM [H]

Identifier: 110678785

GI number: 110678785

Start: 1396815

End: 1397939

Strand: Direct

Name: gatM [H]

Synonym: RD1_1472

Alternate gene names: 110678785

Gene position: 1396815-1397939 (Clockwise)

Preceding gene: 110678784

Following gene: 110678791

Centisome position: 33.8

GC content: 54.58

Gene sequence:

>1125_bases
ATGCAAAAAACTGTCGTCAACAGCTGGAACGAATGGGACCCGCTCAAGCATGTGATTGTGGGCCGTGCCGATGACTGCCA
TATCCCCCCTGAAGAGCCTGCTCTTGACGCGAAAGTGCCGGAGGACAGCGACATGCGCGGCCAGTGGGGGCGCAGGCCAC
AAGAAACAATTGATCGCGCAAACGAACTTTTGGATAATTTCGCATCCATTCTCGAATCCCGTGGTATTCGGGTCGACCGT
CCCACACCCATTGATCATTCCAAGCCCGCGATGACCCCTGATTTTCGAACAGAAAGCCAGTTCGGGTGCATGCCGCCGCG
TGATGTTCTCCTGACAGTCGGCTCGGAAATGCTCGAAGCAACAATGTCCTATCGTTGTCGCTGGTTTGAATATCTGAACT
ATCGACCGCTCATGCAGCAGTACTTCGAGCATGATCCCAACTTCCGCCATGAGAGTGCGCCCAAACCCCGTTTGACGGAT
GCAGACTACCATCCCGATTACCTGAGCGACAAAATCGGTGTCGAAAAGCGCCTGAAATGGACCGCTGAAAAGTTCTTTGT
GACCACCGAAGAAGAGCCGCTTTTTGATGCCGCCGATGTTCTGCGTTTCGGTCGCGATCTCGTGGTGCAGCATGGGTTTA
CCACCAACCTGAAAGGTATTGAATGGCTGCGTCGGCACTTCCCCGACCATCGCGTTCACACCGTCAATTTTCCGGGCGAT
CCCTATCCGATACATATCGATGCGACGTTCACACCGTTGCGCCCCGGTCTGATCCTCAACAATCCGCAGCGCCGCTTGCC
CGAGGAACAGCGCAAGATGTACCGGGACAATGACTGGGAAATCGTGGATGCGGCACAGCCCGCCCATAACACGCCACCGC
CACTGTGCTATTCGTCCACATGGCTTTCGATGAACGTGCTCGTGCTTGATCCCAAGACAGTCTGTGTGGAAAAATCGGAA
GTTTACCAAGCTGAACAGATGGACAAGCTTGGCATGGAGGTCGTGGAGGTGGAGTTGCGTGACGCCTATGCTTTTGGCGG
CGGCTTGCATTGCTGCACGGCGGATGTGTTCCGAGAGGGTACATGTGAAGATTATTTCCCGAATATGGACCAATCGTCGG
TTTGA

Upstream 100 bases:

>100_bases
CATGGCAGCACCTGCCAGAACGCAAGGCAATGCGCTTGCCAGTGCTTGTGTACAAATAAATTTAGTAATACGACTGCCGC
ATCATTTTCGAGGTGGAAGT

Downstream 100 bases:

>100_bases
ATGACGCCTCCGCTTGGCCCTGCGCCGGTTTCGCGGAAGGTAGGTTCGGTATGTATTCAGGGCCGCCGTCGCCAACGGTC
GGCTGGCATGAGCGACATGT

Product: glycine amidinotransferase

Products: NA

Alternate protein names: Aminocyclitol amidinotransferase; ADT; Inosamine-phosphate amidinotransferase I [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRANELLDNFASILESRGIRVDR
PTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEATMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTD
ADYHPDYLSDKIGVEKRLKWTAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD
PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSSTWLSMNVLVLDPKTVCVEKSE
VYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREGTCEDYFPNMDQSSV

Sequences:

>Translated_374_residues
MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRANELLDNFASILESRGIRVDR
PTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEATMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTD
ADYHPDYLSDKIGVEKRLKWTAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD
PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSSTWLSMNVLVLDPKTVCVEKSE
VYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREGTCEDYFPNMDQSSV
>Mature_374_residues
MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRANELLDNFASILESRGIRVDR
PTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEATMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTD
ADYHPDYLSDKIGVEKRLKWTAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD
PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSSTWLSMNVLVLDPKTVCVEKSE
VYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREGTCEDYFPNMDQSSV

Specific function: Catalyzes two non-consecutive transamidination reactions. It converts scyllo-inosamine 4-phosphate into N- amidino-scyllo-inosamine 4-phosphate and N1-amidinostreptamine 6- phosphate into streptidine 6-phosphate [H]

COG id: COG1834

COG function: function code E; N-Dimethylarginine dimethylaminohydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amidinotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4503933, Length=365, Percent_Identity=43.013698630137, Blast_Score=275, Evalue=4e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003198 [H]

Pfam domain/function: PF02274 Amidinotransf [H]

EC number: =2.1.4.2 [H]

Molecular weight: Translated: 43370; Mature: 43370

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRA
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
NELLDNFASILESRGIRVDRPTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTDADYHPDYLSDKIGVEKRLKW
HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHH
TAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD
HHHHEEEECCCCCCHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCC
PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSST
CEEEEEECEECCCCCCEEECCCHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCC
WLSMNVLVLDPKTVCVEKSEVYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREG
EEEEEEEEECCCCEEECHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHCC
TCEDYFPNMDQSSV
CCHHHCCCCCCCCC
>Mature Secondary Structure
MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRA
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
NELLDNFASILESRGIRVDRPTPIDHSKPAMTPDFRTESQFGCMPPRDVLLTVGSEMLEA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TMSYRCRWFEYLNYRPLMQQYFEHDPNFRHESAPKPRLTDADYHPDYLSDKIGVEKRLKW
HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHH
TAEKFFVTTEEEPLFDAADVLRFGRDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGD
HHHHEEEECCCCCCHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCC
PYPIHIDATFTPLRPGLILNNPQRRLPEEQRKMYRDNDWEIVDAAQPAHNTPPPLCYSST
CEEEEEECEECCCCCCEEECCCHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCC
WLSMNVLVLDPKTVCVEKSEVYQAEQMDKLGMEVVEVELRDAYAFGGGLHCCTADVFREG
EEEEEEEEECCCCEEECHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHCC
TCEDYFPNMDQSSV
CCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3118332; 3029728; 1654502; 9922132 [H]