| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is adk [H]
Identifier: 110678750
GI number: 110678750
Start: 1363359
End: 1364006
Strand: Direct
Name: adk [H]
Synonym: RD1_1433
Alternate gene names: 110678750
Gene position: 1363359-1364006 (Clockwise)
Preceding gene: 110678749
Following gene: 110678752
Centisome position: 32.99
GC content: 58.64
Gene sequence:
>648_bases ATGAATATAATACTGTTGGGGCCACCAGGGGCCGGTAAAGGAACACAGGCCCGGATGCTCGAACAAGAGCGCGGCATGGT CCAGTTGAGCACCGGTGATATGCTGCGCGAGGCCAAGGACAGCGGCACGGAGATGGGAAAGGTTGTCGCCGATGTGATGG CGCGCGGTGCCCTGGTGACGGATGAGATCGTGATCGGTCTGATCAAGGAAAAGCTGGATACGGTCGAGGCGTCGGGTTTC ATCTTTGACGGTTTCCCACGCACTTTGGCGCAGGCCGATGCCTTGGGTGCTTTGATGGAAGAAACGGGCCAGACGCTGGA TAAAGTGGTTGAGATGCGCGTTGATGATGCAGCCCTTGTGGCGCGGATCACGGCACGGTCGACCTGCGCGGGCTGCGGTG AGGTCTACAACGATCAAACCAAGCCAATCCCGGCCGACGGGGTGTGCACCAATTGCGGGCAGGCCAAGGAATTCAAGCGT CGCGCGGATGACAATGAGGAAAGCCTCAAGACGCGTCTGATGGAATATTACAAACAGACCTCGCCGCTGATCGGGTATTA CTATGCCAAGGGCATGCTGTCGCGGGTCGACGGTCTGGGCGCGATTGATGCGGTGCAGGGCGAAATCAAGGCTGTGTTGG ACGCGTAA
Upstream 100 bases:
>100_bases AAAGCCATTTGCTGGCCCACCAATACGAAGGCCTGCTGGAGAAGTCGCAACTGCGCGGCAAAAGCGGCAAGGGCCGCAAG AAACGGAGCCCTGTGCGTCG
Downstream 100 bases:
>100_bases ACGCCGACACCGGCTAAGATCCCGACTTAAACTTCGTCAGGCTTTCTGATCTGGGCCGCGAAGCTGGGAATCCGGTGCAG GATGAAGTCATAAAAGGCAG
Product: adenylate kinase
Products: NA
Alternate protein names: AK; ATP-AMP transphosphorylase [H]
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MNIILLGPPGAGKGTQARMLEQERGMVQLSTGDMLREAKDSGTEMGKVVADVMARGALVTDEIVIGLIKEKLDTVEASGF IFDGFPRTLAQADALGALMEETGQTLDKVVEMRVDDAALVARITARSTCAGCGEVYNDQTKPIPADGVCTNCGQAKEFKR RADDNEESLKTRLMEYYKQTSPLIGYYYAKGMLSRVDGLGAIDAVQGEIKAVLDA
Sequences:
>Translated_215_residues MNIILLGPPGAGKGTQARMLEQERGMVQLSTGDMLREAKDSGTEMGKVVADVMARGALVTDEIVIGLIKEKLDTVEASGF IFDGFPRTLAQADALGALMEETGQTLDKVVEMRVDDAALVARITARSTCAGCGEVYNDQTKPIPADGVCTNCGQAKEFKR RADDNEESLKTRLMEYYKQTSPLIGYYYAKGMLSRVDGLGAIDAVQGEIKAVLDA >Mature_215_residues MNIILLGPPGAGKGTQARMLEQERGMVQLSTGDMLREAKDSGTEMGKVVADVMARGALVTDEIVIGLIKEKLDTVEASGF IFDGFPRTLAQADALGALMEETGQTLDKVVEMRVDDAALVARITARSTCAGCGEVYNDQTKPIPADGVCTNCGQAKEFKR RADDNEESLKTRLMEYYKQTSPLIGYYYAKGMLSRVDGLGAIDAVQGEIKAVLDA
Specific function: This small ubiquitous enzyme is essential for maintenance and cell growth [H]
COG id: COG0563
COG function: function code F; Adenylate kinase and related kinases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenylate kinase family [H]
Homologues:
Organism=Homo sapiens, GI7524346, Length=211, Percent_Identity=42.654028436019, Blast_Score=164, Evalue=7e-41, Organism=Homo sapiens, GI4502013, Length=211, Percent_Identity=42.654028436019, Blast_Score=163, Evalue=9e-41, Organism=Homo sapiens, GI310110345, Length=195, Percent_Identity=31.2820512820513, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI53832003, Length=195, Percent_Identity=31.2820512820513, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI8051579, Length=195, Percent_Identity=31.2820512820513, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI53832001, Length=195, Percent_Identity=31.2820512820513, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI19923437, Length=198, Percent_Identity=31.8181818181818, Blast_Score=111, Evalue=4e-25, Organism=Homo sapiens, GI4502011, Length=217, Percent_Identity=30.4147465437788, Blast_Score=106, Evalue=1e-23, Organism=Homo sapiens, GI28144899, Length=215, Percent_Identity=29.7674418604651, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI28144897, Length=215, Percent_Identity=29.7674418604651, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI7706497, Length=218, Percent_Identity=26.605504587156, Blast_Score=88, Evalue=5e-18, Organism=Homo sapiens, GI22749187, Length=187, Percent_Identity=27.807486631016, Blast_Score=77, Evalue=1e-14, Organism=Escherichia coli, GI1786680, Length=219, Percent_Identity=43.8356164383562, Blast_Score=172, Evalue=2e-44, Organism=Caenorhabditis elegans, GI17552384, Length=216, Percent_Identity=40.7407407407407, Blast_Score=153, Evalue=5e-38, Organism=Caenorhabditis elegans, GI17567503, Length=215, Percent_Identity=32.093023255814, Blast_Score=106, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17533833, Length=216, Percent_Identity=31.9444444444444, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17550688, Length=215, Percent_Identity=28.3720930232558, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17537943, Length=192, Percent_Identity=30.2083333333333, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6320432, Length=199, Percent_Identity=41.2060301507538, Blast_Score=158, Evalue=6e-40, Organism=Saccharomyces cerevisiae, GI6321018, Length=197, Percent_Identity=35.5329949238579, Blast_Score=120, Evalue=1e-28, Organism=Saccharomyces cerevisiae, GI6322828, Length=198, Percent_Identity=28.2828282828283, Blast_Score=80, Evalue=2e-16, Organism=Drosophila melanogaster, GI22026816, Length=199, Percent_Identity=43.21608040201, Blast_Score=164, Evalue=3e-41, Organism=Drosophila melanogaster, GI17737899, Length=195, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI24645822, Length=195, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI221459597, Length=215, Percent_Identity=28.3720930232558, Blast_Score=87, Evalue=7e-18, Organism=Drosophila melanogaster, GI21356893, Length=215, Percent_Identity=28.3720930232558, Blast_Score=87, Evalue=7e-18, Organism=Drosophila melanogaster, GI17647141, Length=192, Percent_Identity=28.125, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI24663208, Length=192, Percent_Identity=28.125, Blast_Score=83, Evalue=1e-16,
Paralogues:
None
Copy number: 1640 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006259 - InterPro: IPR000850 - InterPro: IPR007862 [H]
Pfam domain/function: PF00406 ADK; PF05191 ADK_lid [H]
EC number: =2.7.4.3 [H]
Molecular weight: Translated: 23090; Mature: 23090
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00113 ADENYLATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIILLGPPGAGKGTQARMLEQERGMVQLSTGDMLREAKDSGTEMGKVVADVMARGALVT CEEEEECCCCCCCCHHHHHHHHHCCEEEECCHHHHHHHHHCHHHHHHHHHHHHHCCCHHH DEIVIGLIKEKLDTVEASGFIFDGFPRTLAQADALGALMEETGQTLDKVVEMRVDDAALV HHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ARITARSTCAGCGEVYNDQTKPIPADGVCTNCGQAKEFKRRADDNEESLKTRLMEYYKQT HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC SPLIGYYYAKGMLSRVDGLGAIDAVQGEIKAVLDA CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MNIILLGPPGAGKGTQARMLEQERGMVQLSTGDMLREAKDSGTEMGKVVADVMARGALVT CEEEEECCCCCCCCHHHHHHHHHCCEEEECCHHHHHHHHHCHHHHHHHHHHHHHCCCHHH DEIVIGLIKEKLDTVEASGFIFDGFPRTLAQADALGALMEETGQTLDKVVEMRVDDAALV HHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ARITARSTCAGCGEVYNDQTKPIPADGVCTNCGQAKEFKRRADDNEESLKTRLMEYYKQT HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC SPLIGYYYAKGMLSRVDGLGAIDAVQGEIKAVLDA CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9862211; 2537726 [H]