Click here to switch to the map view.

The map label for this gene is erfK [H]

Identifier: 110678453

GI number: 110678453

Start: 1071707

End: 1072297

Strand: Direct

Name: erfK [H]

Synonym: RD1_1118

Alternate gene names: 110678453

Gene position: 1071707-1072297 (Clockwise)

Preceding gene: 110678445

Following gene: 110678454

Centisome position: 25.93

GC content: 57.36

Gene sequence:

>591_bases
GTGAAGCGTCGTGAGTTTTTGCAGAGTTCTGCAGTGAGTGTGTTTATGGGGGGCACGGTTGCGGCCCACGCCGCAGTGCC
TATCACCCTGCCGGATTACAACATGCCCGAGAAGTTCTTGCCGCGCGAAGTGCGCTTGCGTAATGACCTCGACCCTTTTG
AAATTCATGTCGATCCGGGGCAATATGCGCTTTACTGGACGCTCCCTGATAAAAGGGCGATCCGCTATGCGGTCGGTATT
GGGCGCACGCACCTTTATGAACATGGCGAATTTTTTGTTGGGGCCAAAAAGGAATGGCCGAGTTGGACGCCGACACCGGA
AATGATCGAGCGCGACCCGCAAAGCTATGCGCGCTTTGCAGACGGGATGCCGGGCGGGCTCAACAATCCGCTTGGATCAC
GCGGGCTTTACCTGTTCACGCCCAGCCGGGGCGACACGTTTTTGCGCATTCACGGCACCAATGACCCCGAAACCATCGGT
CGGCGTGTGTCGAATGGATGTGCGCGTCTGATCAATGACCAGATGATCGACCTATATGACCGTGTCCCGCTCAAGACACG
CGTGGTGCTGTACCCGATCGGGCGCACTTAG

Upstream 100 bases:

>100_bases
TCGACGGCGCGGGTGCCGCGACAGAGTATTCTTGCGCCGGCTGGACTGCGTAAGATTTTGACGACCGTGTAATTATGTCG
ATTGTGTAGGGGAGGGATCA

Downstream 100 bases:

>100_bases
CGCGTCTGGCGGATTACCTGAAACCTCCAGTAAAACGTGAGCGTTGAAACCCTTTGTTTCAGGCAGCATTGCGTGAAACA
GGACTTTCGCTTGACGCTTT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKRREFLQSSAVSVFMGGTVAAHAAVPITLPDYNMPEKFLPREVRLRNDLDPFEIHVDPGQYALYWTLPDKRAIRYAVGI
GRTHLYEHGEFFVGAKKEWPSWTPTPEMIERDPQSYARFADGMPGGLNNPLGSRGLYLFTPSRGDTFLRIHGTNDPETIG
RRVSNGCARLINDQMIDLYDRVPLKTRVVLYPIGRT

Sequences:

>Translated_196_residues
MKRREFLQSSAVSVFMGGTVAAHAAVPITLPDYNMPEKFLPREVRLRNDLDPFEIHVDPGQYALYWTLPDKRAIRYAVGI
GRTHLYEHGEFFVGAKKEWPSWTPTPEMIERDPQSYARFADGMPGGLNNPLGSRGLYLFTPSRGDTFLRIHGTNDPETIG
RRVSNGCARLINDQMIDLYDRVPLKTRVVLYPIGRT
>Mature_196_residues
MKRREFLQSSAVSVFMGGTVAAHAAVPITLPDYNMPEKFLPREVRLRNDLDPFEIHVDPGQYALYWTLPDKRAIRYAVGI
GRTHLYEHGEFFVGAKKEWPSWTPTPEMIERDPQSYARFADGMPGGLNNPLGSRGLYLFTPSRGDTFLRIHGTNDPETIG
RRVSNGCARLINDQMIDLYDRVPLKTRVVLYPIGRT

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=139, Percent_Identity=33.8129496402878, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787968, Length=130, Percent_Identity=33.8461538461538, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787356, Length=138, Percent_Identity=32.6086956521739, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787040, Length=93, Percent_Identity=38.7096774193548, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 22295; Mature: 22295

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRREFLQSSAVSVFMGGTVAAHAAVPITLPDYNMPEKFLPREVRLRNDLDPFEIHVDPG
CCHHHHHHHCCEEEEECCEEEEHEEEEEECCCCCCCHHHCCHHHHHCCCCCCEEEEECCC
QYALYWTLPDKRAIRYAVGIGRTHLYEHGEFFVGAKKEWPSWTPTPEMIERDPQSYARFA
CEEEEEECCCCCEEEEEEECCCCEEEECCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHH
DGMPGGLNNPLGSRGLYLFTPSRGDTFLRIHGTNDPETIGRRVSNGCARLINDQMIDLYD
CCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RVPLKTRVVLYPIGRT
CCCCEEEEEEEECCCC
>Mature Secondary Structure
MKRREFLQSSAVSVFMGGTVAAHAAVPITLPDYNMPEKFLPREVRLRNDLDPFEIHVDPG
CCHHHHHHHCCEEEEECCEEEEHEEEEEECCCCCCCHHHCCHHHHHCCCCCCEEEEECCC
QYALYWTLPDKRAIRYAVGIGRTHLYEHGEFFVGAKKEWPSWTPTPEMIERDPQSYARFA
CEEEEEECCCCCEEEEEEECCCCEEEECCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHH
DGMPGGLNNPLGSRGLYLFTPSRGDTFLRIHGTNDPETIGRRVSNGCARLINDQMIDLYD
CCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RVPLKTRVVLYPIGRT
CCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]