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The map label for this gene is rarD [C]

Identifier: 110678454

GI number: 110678454

Start: 1072516

End: 1073412

Strand: Direct

Name: rarD [C]

Synonym: RD1_1119

Alternate gene names: 110678454

Gene position: 1072516-1073412 (Clockwise)

Preceding gene: 110678453

Following gene: 110678456

Centisome position: 25.95

GC content: 58.19

Gene sequence:

>897_bases
TTGAAATCTGCGCATGCTGACACGCCGCAGGGCTTTGCCTTTGCGATGTCTGCCTACTTTTTGTGGGGTTTTTTGCCCAT
CTACATGAAGGCACTGGCGGAGGTCACACCGCTCGAGGTCCTTGCGCATCGGGTCGTCTGGTCGATCCCGATTGCAGCAA
TCGTGCTCGTCGCACTGGGGCGCACGAAAGACCTGCGCGCGGCGTTGATGTCGCCGCGCACGCTCGCGATGGGGGCTGTG
ACGGCCGCGCTGATCTCGGCGAACTGGGGGATTTACATCTGGTCCATCTTTTCGGGCAAGGCGCTTGAGGCCGCCCTTGG
CTATTACATCAACCCGTTGTTCAGCGTCTTTCTGGGCGCGTTGCTGCTGGGGGAACGGCTCGACAAGATCAAATGGGCTG
CCATGGCGCTCGCCCTGGCGGCGGTCATTATTCTGACAGTGGAAAGCGGTTCCGTTCCCATCGTCGCACTTGCACTGACC
GGAACCTGGGGGTTTTACGCATACTTCAAACGGTCGCTCCCCATCGGACCAAATCAAGGATTCCTGCTCGAAGTTCTGCT
GCTGTCTGTGCCGGCTTTGGGGTTCATTGCATATCTGGCCTATTCCGGCACTGGGCATTTCATGATGGGCAGTGCGCCTG
ATACGTGGCTGCTGATCGGCTGCGGCGTCGTAACGGCGGTTCCGCTGATGTTATATGCAAACGGGGCAAAACTGTTGCGC
CTTTCCACGATTGGCATGCTCCAATACATCGCGCCCACGATGATTTTCCTGATCGCGGTCTTTGTTTTTGGGGAGCAATT
TGGCCGCGCGCGGATGATCGCCTTCCCGATGATCTGGTGTGCCTTGGCGCTTTATTCATATGCGCTGTGGAAAGAAACAC
GGCTGGCCCGCGCCTGA

Upstream 100 bases:

>100_bases
ACCCCATCGGCTGGGGTCAATGTTCAATTGCGTCGCCGTTCAATCCGTGTTTAAGGGCAAGGTATCCCCGCAATTCTGCG
CTCTTTGACGGAGGTCTGGT

Downstream 100 bases:

>100_bases
CTACTGCAGACGATCCAGAAGCTGCGGGGAAGGGACGCCCGTCACCGGCAGTCCCTGGCTGGCCTGATAGGCGCGAATGG
CCGCTTGCGAATTGGGACCA

Product: rarD protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKSAHADTPQGFAFAMSAYFLWGFLPIYMKALAEVTPLEVLAHRVVWSIPIAAIVLVALGRTKDLRAALMSPRTLAMGAV
TAALISANWGIYIWSIFSGKALEAALGYYINPLFSVFLGALLLGERLDKIKWAAMALALAAVIILTVESGSVPIVALALT
GTWGFYAYFKRSLPIGPNQGFLLEVLLLSVPALGFIAYLAYSGTGHFMMGSAPDTWLLIGCGVVTAVPLMLYANGAKLLR
LSTIGMLQYIAPTMIFLIAVFVFGEQFGRARMIAFPMIWCALALYSYALWKETRLARA

Sequences:

>Translated_298_residues
MKSAHADTPQGFAFAMSAYFLWGFLPIYMKALAEVTPLEVLAHRVVWSIPIAAIVLVALGRTKDLRAALMSPRTLAMGAV
TAALISANWGIYIWSIFSGKALEAALGYYINPLFSVFLGALLLGERLDKIKWAAMALALAAVIILTVESGSVPIVALALT
GTWGFYAYFKRSLPIGPNQGFLLEVLLLSVPALGFIAYLAYSGTGHFMMGSAPDTWLLIGCGVVTAVPLMLYANGAKLLR
LSTIGMLQYIAPTMIFLIAVFVFGEQFGRARMIAFPMIWCALALYSYALWKETRLARA
>Mature_298_residues
MKSAHADTPQGFAFAMSAYFLWGFLPIYMKALAEVTPLEVLAHRVVWSIPIAAIVLVALGRTKDLRAALMSPRTLAMGAV
TAALISANWGIYIWSIFSGKALEAALGYYINPLFSVFLGALLLGERLDKIKWAAMALALAAVIILTVESGSVPIVALALT
GTWGFYAYFKRSLPIGPNQGFLLEVLLLSVPALGFIAYLAYSGTGHFMMGSAPDTWLLIGCGVVTAVPLMLYANGAKLLR
LSTIGMLQYIAPTMIFLIAVFVFGEQFGRARMIAFPMIWCALALYSYALWKETRLARA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=38.6440677966102, Blast_Score=202, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32318; Mature: 32318

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSAHADTPQGFAFAMSAYFLWGFLPIYMKALAEVTPLEVLAHRVVWSIPIAAIVLVALG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
RTKDLRAALMSPRTLAMGAVTAALISANWGIYIWSIFSGKALEAALGYYINPLFSVFLGA
CCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
LLLGERLDKIKWAAMALALAAVIILTVESGSVPIVALALTGTWGFYAYFKRSLPIGPNQG
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCHHHHHHHHHCCCCCCCCC
FLLEVLLLSVPALGFIAYLAYSGTGHFMMGSAPDTWLLIGCGVVTAVPLMLYANGAKLLR
HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECHHHHHHHHHHHCCCCCEEH
LSTIGMLQYIAPTMIFLIAVFVFGEQFGRARMIAFPMIWCALALYSYALWKETRLARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSAHADTPQGFAFAMSAYFLWGFLPIYMKALAEVTPLEVLAHRVVWSIPIAAIVLVALG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
RTKDLRAALMSPRTLAMGAVTAALISANWGIYIWSIFSGKALEAALGYYINPLFSVFLGA
CCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
LLLGERLDKIKWAAMALALAAVIILTVESGSVPIVALALTGTWGFYAYFKRSLPIGPNQG
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCHHHHHHHHHCCCCCCCCC
FLLEVLLLSVPALGFIAYLAYSGTGHFMMGSAPDTWLLIGCGVVTAVPLMLYANGAKLLR
HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECHHHHHHHHHHHCCCCCEEH
LSTIGMLQYIAPTMIFLIAVFVFGEQFGRARMIAFPMIWCALALYSYALWKETRLARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]