| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yieH [H]
Identifier: 110678093
GI number: 110678093
Start: 700100
End: 700744
Strand: Direct
Name: yieH [H]
Synonym: RD1_0723
Alternate gene names: 110678093
Gene position: 700100-700744 (Clockwise)
Preceding gene: 110678091
Following gene: 110678094
Centisome position: 16.94
GC content: 61.4
Gene sequence:
>645_bases ATGCCCCCCGAAATGGTTCTGTTTGATTGCGACGGCGTATTGGTCGATAGCGAAGCGCTGACGGCGGATGTGTTATGTGC GAATCTGCGGCGGCATGGGCTGGCCCTGACCCATGCAGAGCTTGGCGCGATGTTTCTGGGCGGCACGATCATGGGGGTGG AAGCAAAAGCGCTGGAACTGGGCGCCGACCTGCCCAGGGACTGGGTAGATCAGATTTACGCCGAGATTTTTGAAACGCTC GGGACCTCCGTCCCGATCATTCCCGGTGTGCATGCGGTGCTTGATGCACTGGATGCTGCGGGCATTCTTTATGCGGTCGG CTCGAATGGCCCGCATCGAAAGATGCAGATTACCCTGACAAAAACGGGCCTGATGGACCGGCTGGCCGGGCGCATCTATT CACGCGAAGATGTTGCGCAGCCGAAACCCGCGCCCGATGTCTATCTGAAGGCGGCGGCAGATGCGGGGGTCGCGCCGGAG CGCTGTGTCGTGATTGAAGACAGCCCCAATGGCGCGCGCGCCGGGCAGGCGGCGGGCATGTGGTGCCTTGGGTTTGCGGC GGAAACCGATGCGGCCCTGTTGGCACCGGTGTGCGACGATGTCTTTTATGCAATGGGTGATCTGCCGGGGCTTTTGGGTC TCTGA
Upstream 100 bases:
>100_bases TCCAATAACGAATTTGTCAGAAGCTGTGAGTGATCTGCCGCTATTTCCCGCCTGAGCATTGACGACGGGCGGGCTGAGGT GCACTACGAACCCCATGAAG
Downstream 100 bases:
>100_bases CGGCGGTTTGTCCACTATTACAGCGTCAAACATTCTGGTGATCTGCGTGAAATCTCTCCGCAATTCATTTGGTCGCGCGT GCTCGCGCGCCTACAACTGC
Product: hydrolase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MPPEMVLFDCDGVLVDSEALTADVLCANLRRHGLALTHAELGAMFLGGTIMGVEAKALELGADLPRDWVDQIYAEIFETL GTSVPIIPGVHAVLDALDAAGILYAVGSNGPHRKMQITLTKTGLMDRLAGRIYSREDVAQPKPAPDVYLKAAADAGVAPE RCVVIEDSPNGARAGQAAGMWCLGFAAETDAALLAPVCDDVFYAMGDLPGLLGL
Sequences:
>Translated_214_residues MPPEMVLFDCDGVLVDSEALTADVLCANLRRHGLALTHAELGAMFLGGTIMGVEAKALELGADLPRDWVDQIYAEIFETL GTSVPIIPGVHAVLDALDAAGILYAVGSNGPHRKMQITLTKTGLMDRLAGRIYSREDVAQPKPAPDVYLKAAADAGVAPE RCVVIEDSPNGARAGQAAGMWCLGFAAETDAALLAPVCDDVFYAMGDLPGLLGL >Mature_213_residues PPEMVLFDCDGVLVDSEALTADVLCANLRRHGLALTHAELGAMFLGGTIMGVEAKALELGADLPRDWVDQIYAEIFETLG TSVPIIPGVHAVLDALDAAGILYAVGSNGPHRKMQITLTKTGLMDRLAGRIYSREDVAQPKPAPDVYLKAAADAGVAPER CVVIEDSPNGARAGQAAGMWCLGFAAETDAALLAPVCDDVFYAMGDLPGLLGL
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates phosphoenolpyruvate and AMP [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI1790151, Length=210, Percent_Identity=30, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI87082080, Length=206, Percent_Identity=32.0388349514563, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788021, Length=177, Percent_Identity=30.5084745762712, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006439 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 22417; Mature: 22286
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPEMVLFDCDGVLVDSEALTADVLCANLRRHGLALTHAELGAMFLGGTIMGVEAKALEL CCCCEEEEECCCEEECCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCEEECCCHHHHHH GADLPRDWVDQIYAEIFETLGTSVPIIPGVHAVLDALDAAGILYAVGSNGPHRKMQITLT CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCEEEEEEE KTGLMDRLAGRIYSREDVAQPKPAPDVYLKAAADAGVAPERCVVIEDSPNGARAGQAAGM CHHHHHHHHHHHCCCHHCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCE WCLGFAAETDAALLAPVCDDVFYAMGDLPGLLGL EEEEECCCCCCHHHHHHHHHHHHHHHCCCHHCCC >Mature Secondary Structure PPEMVLFDCDGVLVDSEALTADVLCANLRRHGLALTHAELGAMFLGGTIMGVEAKALEL CCCEEEEECCCEEECCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCEEECCCHHHHHH GADLPRDWVDQIYAEIFETLGTSVPIIPGVHAVLDALDAAGILYAVGSNGPHRKMQITLT CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCEEEEEEE KTGLMDRLAGRIYSREDVAQPKPAPDVYLKAAADAGVAPERCVVIEDSPNGARAGQAAGM CHHHHHHHHHHHCCCHHCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCE WCLGFAAETDAALLAPVCDDVFYAMGDLPGLLGL EEEEECCCCCCHHHHHHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7686882; 9278503 [H]