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The map label for this gene is yedY [H]

Identifier: 110678094

GI number: 110678094

Start: 700873

End: 701778

Strand: Direct

Name: yedY [H]

Synonym: RD1_0725

Alternate gene names: 110678094

Gene position: 700873-701778 (Clockwise)

Preceding gene: 110678093

Following gene: 110678095

Centisome position: 16.96

GC content: 57.17

Gene sequence:

>906_bases
ATGGCCTTTCGCTGGAAGAATACCCTTAAAGATCGCGACGTGACGGATGAGGCGTTGTTCCTGAACAGGCGGCAACTTAT
GAAGGGTGCCGCGGCGGGTGCCGGTTTCGCCCTGAGCAGTCAGGCTGTCGCGGCGGATGAGACGCTGGAGCCCACCTCGT
GGGAAGACATTACACAATACAACAACTTTTATGAATTCGGCACGGGCAAGGATGATCCGGTCCGATATGCCGGCGCGCTG
ACGACCTCTCCCTGGACGGTGAAGATCGACGGGATGGTGGATCGTCCGGCGGATTACGATTTCGAAGACATCATGAAGGC
GATGACCGTGGAAGAGCGCATCTACCGCTTCCGCTGTGTTGAGGCGTGGTCGATGGTGATCCCGTGGAATGGTTTTGAAC
TGGCGGACCTGCTGGAATTCGCGGGGGTGCAGGCGGGGGCGAAATATGTGCGTTTCGAAACCCTCTACCGGCCTTCCGAG
ATGCGGGGCCAAAGCAGCAATTTCATCGACTGGCCCTATGTCGAAGGGCTGCGCCTTGATGAGGCGATGCATCCGCTGAC
CATCATGGCCACCGGGATATATGGGCGGGACATTCCCAATCAGAACGGCGCGCCGATGCGTCTGGTGGTGCCGTGGAAAT
ATGGCTTCAAATCGATCAAGTCGATCGTGCGTATTACACTGACGGATGAAGAGCCGGTGAATACGTGGCAGCAATTGCAG
CCCAGCGAATACGGGTTTTACGCAAATGTGAATCCCGAGGTTGACCATCCGCGGTGGTCGCAGGCGACGGAACGTGTGAT
CGGCGGTGGTTTGTTTTCCCCGCGTATCCCGACGCTCATGTTCAACGGCTACGAAGAAGAGGTCGCAGGCCTTTATGCCG
GTATGGATCTGACCAAGTTCTACTGA

Upstream 100 bases:

>100_bases
AACATTCTGGTGATCTGCGTGAAATCTCTCCGCAATTCATTTGGTCGCGCGTGCTCGCGCGCCTACAACTGCTGCAACAC
GCAAAAAACCGGAGCACAAA

Downstream 100 bases:

>100_bases
GCAAAGACTGTAGTATATAGTATCCAGCATGCCGCTCACTGATCGCATAAACGGCTTTGCCCGCAAGGTTCCGGTTTGGG
CGGTCTATATACTGTACCTG

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MAFRWKNTLKDRDVTDEALFLNRRQLMKGAAAGAGFALSSQAVAADETLEPTSWEDITQYNNFYEFGTGKDDPVRYAGAL
TTSPWTVKIDGMVDRPADYDFEDIMKAMTVEERIYRFRCVEAWSMVIPWNGFELADLLEFAGVQAGAKYVRFETLYRPSE
MRGQSSNFIDWPYVEGLRLDEAMHPLTIMATGIYGRDIPNQNGAPMRLVVPWKYGFKSIKSIVRITLTDEEPVNTWQQLQ
PSEYGFYANVNPEVDHPRWSQATERVIGGGLFSPRIPTLMFNGYEEEVAGLYAGMDLTKFY

Sequences:

>Translated_301_residues
MAFRWKNTLKDRDVTDEALFLNRRQLMKGAAAGAGFALSSQAVAADETLEPTSWEDITQYNNFYEFGTGKDDPVRYAGAL
TTSPWTVKIDGMVDRPADYDFEDIMKAMTVEERIYRFRCVEAWSMVIPWNGFELADLLEFAGVQAGAKYVRFETLYRPSE
MRGQSSNFIDWPYVEGLRLDEAMHPLTIMATGIYGRDIPNQNGAPMRLVVPWKYGFKSIKSIVRITLTDEEPVNTWQQLQ
PSEYGFYANVNPEVDHPRWSQATERVIGGGLFSPRIPTLMFNGYEEEVAGLYAGMDLTKFY
>Mature_300_residues
AFRWKNTLKDRDVTDEALFLNRRQLMKGAAAGAGFALSSQAVAADETLEPTSWEDITQYNNFYEFGTGKDDPVRYAGALT
TSPWTVKIDGMVDRPADYDFEDIMKAMTVEERIYRFRCVEAWSMVIPWNGFELADLLEFAGVQAGAKYVRFETLYRPSEM
RGQSSNFIDWPYVEGLRLDEAMHPLTIMATGIYGRDIPNQNGAPMRLVVPWKYGFKSIKSIVRITLTDEEPVNTWQQLQP
SEYGFYANVNPEVDHPRWSQATERVIGGGLFSPRIPTLMFNGYEEEVAGLYAGMDLTKFY

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family [H]

Homologues:

Organism=Escherichia coli, GI1788282, Length=324, Percent_Identity=52.4691358024691, Blast_Score=325, Evalue=3e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867 [H]

Pfam domain/function: PF00174 Oxidored_molyb [H]

EC number: NA

Molecular weight: Translated: 34341; Mature: 34210

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFRWKNTLKDRDVTDEALFLNRRQLMKGAAAGAGFALSSQAVAADETLEPTSWEDITQY
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCHHHHHHH
NNFYEFGTGKDDPVRYAGALTTSPWTVKIDGMVDRPADYDFEDIMKAMTVEERIYRFRCV
CCEEECCCCCCCCEEEEEEEECCCEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHH
EAWSMVIPWNGFELADLLEFAGVQAGAKYVRFETLYRPSEMRGQSSNFIDWPYVEGLRLD
HHEEEEECCCCCCHHHHHHHHCHHCCCCEEEEHHHCCCHHHCCCCCCCCCCCCCCCEEHH
EAMHPLTIMATGIYGRDIPNQNGAPMRLVVPWKYGFKSIKSIVRITLTDEEPVNTWQQLQ
HHHCCEEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHEEEEEECCCCCCCHHHHCC
PSEYGFYANVNPEVDHPRWSQATERVIGGGLFSPRIPTLMFNGYEEEVAGLYAGMDLTKF
CCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHC
Y
C
>Mature Secondary Structure 
AFRWKNTLKDRDVTDEALFLNRRQLMKGAAAGAGFALSSQAVAADETLEPTSWEDITQY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCHHHHHHH
NNFYEFGTGKDDPVRYAGALTTSPWTVKIDGMVDRPADYDFEDIMKAMTVEERIYRFRCV
CCEEECCCCCCCCEEEEEEEECCCEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHH
EAWSMVIPWNGFELADLLEFAGVQAGAKYVRFETLYRPSEMRGQSSNFIDWPYVEGLRLD
HHEEEEECCCCCCHHHHHHHHCHHCCCCEEEEHHHCCCHHHCCCCCCCCCCCCCCCEEHH
EAMHPLTIMATGIYGRDIPNQNGAPMRLVVPWKYGFKSIKSIVRITLTDEEPVNTWQQLQ
HHHCCEEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHEEEEEECCCCCCCHHHHCC
PSEYGFYANVNPEVDHPRWSQATERVIGGGLFSPRIPTLMFNGYEEEVAGLYAGMDLTKF
CCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA