BacMap

Definition	Roseobacter denitrificans OCh 114, complete genome.
Accession	NC_008209
Length	4,133,097

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The map label for this gene is ucpA [H]

Identifier: 110678061

GI number: 110678061

Start: 665467

End: 666228

Strand: Direct

Name: ucpA [H]

Synonym: RD1_0685

Alternate gene names: 110678061

Gene position: 665467-666228 (Clockwise)

Preceding gene: 110678058

Following gene: 110678062

Centisome position: 16.1

GC content: 58.66

Gene sequence:

>762_bases
ATGCCTGGGCAAAGACTTAAAGGAAAACGCGCGCTTGTAACCGCCGCCGGTCAGGGGATTGGCCGCGCCAGTGCATTGGC
GATGGCTGAAGAGGGGGCGCAGGTCTTTGCGACAGACATAGACATGGATGCGCTTTCAACGATTCGGGAGGCGAATCACG
AAAATATCGAAATTTTCGAACTTGATGCCCGCAGCGATGACAGCGTGGCCGCCGGTGTCGAACGGGCCAGACCGGACGTT
TTGTTCAACTGTGCAGGCTTTGTGCATCACGGCACAATTCTGGATGCAACGGATGGTGATTGGGACTTTGCCTTTGATCT
GAACGTGCGCTCCATGTTGCGCACCATCAAGGCGGCACTGCCCGGCATGCTGAATCGCGGTGTCGGGTCGATCGTCAATA
TGTCGTCTGCCTGCTCTTCGGTCATGGGTGCGCCAAACCGGTTTATCTATGGCACGACCAAGGCTGCGGTGATCGGGCTG
ACCAAATCGGTTGCGCTGGATTTCATCGACAAGGGCATCCGCTGCAATGCGATCTGCCCGGGCACGGTGGAAAGCCCAAG
CTGGCTTGAACGCGTGGACGCTCTGGGCAAACAGTTGGGCAGCCGGGAGGAAGCGCTGGCGCAATTCGTGGCCCGGCAAC
CCATGGGGCGCGTTGCCAGTGCCGATGAGATCGCCTCGCTCGTCGTCTATCTTGCCAGCGATGAAAGCGCGTTCACCACA
GGGCATCCCCATATCATTGACGGAGGCTGGTCAGGCCAATGA

Upstream 100 bases:

>100_bases
GTGGTTTTTTGATGAAAGTCAGCAAAAAATGTGCAAGGCGAGGCGGGTCGAAACCTGCCATCCGCCGACAACACACATGC
TGATAAAGGGAGAGAATATT

Downstream 100 bases:

>100_bases
CAAAGAAAATCGGTATCGAAGACTTGCGGTCGCGCAAGTGGTTCATGAACCCGGACAATCCGGAAATGACCGCGCTTTAT
CTTGAGCGCTATCTCAATTA

Product: oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPGQRLKGKRALVTAAGQGIGRASALAMAEEGAQVFATDIDMDALSTIREANHENIEIFELDARSDDSVAAGVERARPDV
LFNCAGFVHHGTILDATDGDWDFAFDLNVRSMLRTIKAALPGMLNRGVGSIVNMSSACSSVMGAPNRFIYGTTKAAVIGL
TKSVALDFIDKGIRCNAICPGTVESPSWLERVDALGKQLGSREEALAQFVARQPMGRVASADEIASLVVYLASDESAFTT
GHPHIIDGGWSGQ

Sequences:

>Translated_253_residues
MPGQRLKGKRALVTAAGQGIGRASALAMAEEGAQVFATDIDMDALSTIREANHENIEIFELDARSDDSVAAGVERARPDV
LFNCAGFVHHGTILDATDGDWDFAFDLNVRSMLRTIKAALPGMLNRGVGSIVNMSSACSSVMGAPNRFIYGTTKAAVIGL
TKSVALDFIDKGIRCNAICPGTVESPSWLERVDALGKQLGSREEALAQFVARQPMGRVASADEIASLVVYLASDESAFTT
GHPHIIDGGWSGQ
>Mature_252_residues
PGQRLKGKRALVTAAGQGIGRASALAMAEEGAQVFATDIDMDALSTIREANHENIEIFELDARSDDSVAAGVERARPDVL
FNCAGFVHHGTILDATDGDWDFAFDLNVRSMLRTIKAALPGMLNRGVGSIVNMSSACSSVMGAPNRFIYGTTKAAVIGLT
KSVALDFIDKGIRCNAICPGTVESPSWLERVDALGKQLGSREEALAQFVARQPMGRVASADEIASLVVYLASDESAFTTG
HPHIIDGGWSGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=56.8548387096774, Blast_Score=250, Evalue=7e-67,
Organism=Homo sapiens, GI15277342, Length=264, Percent_Identity=31.4393939393939, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=32, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=29.1338582677165, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI4504505, Length=263, Percent_Identity=28.5171102661597, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254992, Length=256, Percent_Identity=28.125, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI31542939, Length=241, Percent_Identity=27.3858921161826, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=24.7104247104247, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=29.2929292929293, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI59889578, Length=146, Percent_Identity=34.2465753424658, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI223718074, Length=207, Percent_Identity=30.9178743961353, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI10190704, Length=260, Percent_Identity=27.3076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=25.6809338521401, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI5031737, Length=260, Percent_Identity=25, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=38.1889763779528, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=32.5301204819277, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=28.8537549407115, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789378, Length=261, Percent_Identity=32.183908045977, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=29.3436293436293, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=27.7777777777778, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=30.2788844621514, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=26.1904761904762, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787905, Length=263, Percent_Identity=29.277566539924, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789057, Length=252, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=27.6422764227642, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787820, Length=178, Percent_Identity=28.6516853932584, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=32.6771653543307, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=32.2834645669291, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=30.8880308880309, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=31.203007518797, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=256, Percent_Identity=31.640625, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=274, Percent_Identity=29.1970802919708, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17544670, Length=274, Percent_Identity=30.2919708029197, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=262, Percent_Identity=30.9160305343511, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=31.0861423220974, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=29.3650793650794, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=30.5019305019305, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=31.0606060606061, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=28.0442804428044, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.1666666666667, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=281, Percent_Identity=27.7580071174377, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=274, Percent_Identity=28.1021897810219, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=27.8195488721804, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=277, Percent_Identity=27.0758122743682, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=26.530612244898, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=262, Percent_Identity=27.0992366412214, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=275, Percent_Identity=26.9090909090909, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=29.2592592592593, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=278, Percent_Identity=26.978417266187, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=267, Percent_Identity=28.8389513108614, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=274, Percent_Identity=28.1021897810219, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=26.1992619926199, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=266, Percent_Identity=27.4436090225564, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=271, Percent_Identity=27.3062730627306, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=26.0204081632653, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=263, Percent_Identity=27.7566539923954, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=254, Percent_Identity=28.3464566929134, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=32.03125, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=32.9365079365079, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21355319, Length=264, Percent_Identity=30.6818181818182, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=30.7692307692308, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=29.9610894941634, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=29.3893129770992, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=27.843137254902, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644337, Length=175, Percent_Identity=34.2857142857143, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=29.7435897435897, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281364892, Length=166, Percent_Identity=34.9397590361446, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26783; Mature: 26651

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGQRLKGKRALVTAAGQGIGRASALAMAEEGAQVFATDIDMDALSTIREANHENIEIFE
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEE
LDARSDDSVAAGVERARPDVLFNCAGFVHHGTILDATDGDWDFAFDLNVRSMLRTIKAAL
ECCCCCCHHHHHHHHCCCCEEEEHHHHHCCCEEEECCCCCEEEEEECCHHHHHHHHHHHH
PGMLNRGVGSIVNMSSACSSVMGAPNRFIYGTTKAAVIGLTKSVALDFIDKGIRCNAICP
HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCEECEECC
GTVESPSWLERVDALGKQLGSREEALAQFVARQPMGRVASADEIASLVVYLASDESAFTT
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCEEC
GHPHIIDGGWSGQ
CCCEEECCCCCCC
>Mature Secondary Structure 
PGQRLKGKRALVTAAGQGIGRASALAMAEEGAQVFATDIDMDALSTIREANHENIEIFE
CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEE
LDARSDDSVAAGVERARPDVLFNCAGFVHHGTILDATDGDWDFAFDLNVRSMLRTIKAAL
ECCCCCCHHHHHHHHCCCCEEEEHHHHHCCCEEEECCCCCEEEEEECCHHHHHHHHHHHH
PGMLNRGVGSIVNMSSACSSVMGAPNRFIYGTTKAAVIGLTKSVALDFIDKGIRCNAICP
HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCEECEECC
GTVESPSWLERVDALGKQLGSREEALAQFVARQPMGRVASADEIASLVVYLASDESAFTT
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCEEC
GHPHIIDGGWSGQ
CCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]