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The map label for this gene is bphR [H]

Identifier: 110678058

GI number: 110678058

Start: 662762

End: 663439

Strand: Direct

Name: bphR [H]

Synonym: RD1_0682

Alternate gene names: 110678058

Gene position: 662762-663439 (Clockwise)

Preceding gene: 110678057

Following gene: 110678061

Centisome position: 16.04

GC content: 57.08

Gene sequence:

>678_bases
ATGTTCGACCGCGACATTTACTCAGATTTGCAGCATCGCCTCATCACCAATGATTTCGATCATGGCGAAAAACTGCGTGC
AGAACAATTGAAACGTGACTACGGCTGCTCCGCCAGTACCGTGCGTGAGGCGCTCTTTCGGCTATCGACGGAAGGGCTGG
TCGATTTTCAGGAACAGCGCGGTTTTCGCGTGCCGGAAAAATCGGCTGCGGTTCTGGCTGAACTGACGCACATCCGAATC
CTGCTTGAGGGCGAGGGCACGGTGCTGTCGATCCGGCAGGGCGGGGTGGCCTGGGAGGCGCGGCTGACAGCGGCGCACCA
TCAACTCAGCCATATCGAAAAGCGAATCCACGCCAGCGAAGACCCGACCGATCTGGTGCCGTTGTGGTTTCAGGCTGAAC
TGGAGTTTCACCAGACGCTGATTTCGGCCTGCGACTCTGCCACGCTCAAGGCGATGCATGTGCAGGTCTACCGACGCTTC
CGGCAGCAGTTGATGATTGCCGATCGCAGTTTTGATTTCATTTCAAAGAACATCCAGCATCATCACGCGATCATGGTCGC
CGCCCTTGATGGCAATGAGGATCTGACGCGCCAGAAAATCCACGACCATCTGGCACGGCATCTTGGCGGTGCATTCAGCG
CGCAAGCCGCTCAGCGGTTCAAATCCTCCGCAATGTAG

Upstream 100 bases:

>100_bases
CCCGCAATAGAATTTTCATATTTCTGAAAATTTTGAGATTTATATGGATTATTGAAATTATCTTGGTACGGTCGGGGTAA
GTAGTACGTGAGGTACGTGG

Downstream 100 bases:

>100_bases
ATTTCGATGATCTCGTCAAAACTGGCTTCGGCCTTGAACCCGAGTGCCTCTGCGCGGGCAGGATTGAAATCGCGCGGCCA
GCCTTCGACGATCTTGGCAA

Product: transcriptional regulatory protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MFDRDIYSDLQHRLITNDFDHGEKLRAEQLKRDYGCSASTVREALFRLSTEGLVDFQEQRGFRVPEKSAAVLAELTHIRI
LLEGEGTVLSIRQGGVAWEARLTAAHHQLSHIEKRIHASEDPTDLVPLWFQAELEFHQTLISACDSATLKAMHVQVYRRF
RQQLMIADRSFDFISKNIQHHHAIMVAALDGNEDLTRQKIHDHLARHLGGAFSAQAAQRFKSSAM

Sequences:

>Translated_225_residues
MFDRDIYSDLQHRLITNDFDHGEKLRAEQLKRDYGCSASTVREALFRLSTEGLVDFQEQRGFRVPEKSAAVLAELTHIRI
LLEGEGTVLSIRQGGVAWEARLTAAHHQLSHIEKRIHASEDPTDLVPLWFQAELEFHQTLISACDSATLKAMHVQVYRRF
RQQLMIADRSFDFISKNIQHHHAIMVAALDGNEDLTRQKIHDHLARHLGGAFSAQAAQRFKSSAM
>Mature_225_residues
MFDRDIYSDLQHRLITNDFDHGEKLRAEQLKRDYGCSASTVREALFRLSTEGLVDFQEQRGFRVPEKSAAVLAELTHIRI
LLEGEGTVLSIRQGGVAWEARLTAAHHQLSHIEKRIHASEDPTDLVPLWFQAELEFHQTLISACDSATLKAMHVQVYRRF
RQQLMIADRSFDFISKNIQHHHAIMVAALDGNEDLTRQKIHDHLARHLGGAFSAQAAQRFKSSAM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=153, Percent_Identity=33.9869281045752, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25677; Mature: 25677

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDRDIYSDLQHRLITNDFDHGEKLRAEQLKRDYGCSASTVREALFRLSTEGLVDFQEQR
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHC
GFRVPEKSAAVLAELTHIRILLEGEGTVLSIRQGGVAWEARLTAAHHQLSHIEKRIHASE
CCCCCHHHHHHHHHHHHEEEEEECCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHCCCC
DPTDLVPLWFQAELEFHQTLISACDSATLKAMHVQVYRRFRQQLMIADRSFDFISKNIQH
CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HHAIMVAALDGNEDLTRQKIHDHLARHLGGAFSAQAAQRFKSSAM
CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MFDRDIYSDLQHRLITNDFDHGEKLRAEQLKRDYGCSASTVREALFRLSTEGLVDFQEQR
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHC
GFRVPEKSAAVLAELTHIRILLEGEGTVLSIRQGGVAWEARLTAAHHQLSHIEKRIHASE
CCCCCHHHHHHHHHHHHEEEEEECCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHCCCC
DPTDLVPLWFQAELEFHQTLISACDSATLKAMHVQVYRRFRQQLMIADRSFDFISKNIQH
CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HHAIMVAALDGNEDLTRQKIHDHLARHLGGAFSAQAAQRFKSSAM
CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1569021 [H]