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The map label for this gene is ydgD [C]

Identifier: 110678007

GI number: 110678007

Start: 609598

End: 610419

Strand: Direct

Name: ydgD [C]

Synonym: RD1_0628

Alternate gene names: 110678007

Gene position: 609598-610419 (Clockwise)

Preceding gene: 110678006

Following gene: 110678008

Centisome position: 14.75

GC content: 63.38

Gene sequence:

>822_bases
ATGCGCAGATGGGTTCGAGCAGCAGCACTGCTGGGGTGCCTTGCCACGTCGGCAGCAGCCGATCCCCAAGGCTTGCGTGC
CCTTGAGACGGGTGTTGACGCTGGCGCCTGGGAGGCTGTGGGCCGTTTGAACATCGGTGGGCGAGGTTTTTGCACGGGGG
CCTTGATTGCACCTGACATTGTGCTGACAGCTGCGCATTGTCTGTTCGACAAACGCAGTGGCGCGCAGGTTGATCCGACA
GGAATCGAGTTTCTGGCCGGTTGGCGCAAGGGGCGCGCGGCGGCGCATCGGCAGGTCAAACACGCAGCTTTGCACAAAGA
TTACACCTATGGCGACGTGGTCGCGCCGGAGAGGGTGCGTTACGATTTGGCGCTGCTGCGTCTGGTGCGGCCAATCCGAA
ACACCACGATCACCCCCTTTGAAACCGCCCCGCACCCGGCAAAGGGCGCGCAGGTCGGCGTCGTGAGCTACGGGCGTGAC
CGCGCCGAAGCGCCCTCGCTGCAAGAGGTTTGCGAGGTGCTTGGCCGTCAGGAAGGGGTGTTGATCACCACATGCGCGGT
CGATTTCGGATCGTCTGGCGCGCCGATCTTTTCCTTTGCGTCTGGCGCGGCGGTCATCGTATCCGTGGTGTCCGCCAAGG
CCGAGGTTGAGGGGCAGAACATCGCGCTCGGCACGGATCTCAGCGGTGCGCTTGCTGCATTGCATGAAACGCTGGCGCGG
CAAAACCGTCCCTTCGTGCGTGCTGTGCCCGCCTTGCGGCAAACCACCATCGAAGAAAGCCGCAGTAGCATGGGGGCCAG
GTTTATCCGCCCTGCGCAGTAA

Upstream 100 bases:

>100_bases
CCTGCGCTGACCTCCGCTGAAGGGGGGCAGGACAGAAACCGCCGGCCTCATTTTTGCCCCAACCGATCTGTAGTGCTAGG
CCCGATCAGAAAGGGGTCAC

Downstream 100 bases:

>100_bases
CACATTGGCATCCTTTCGATTGCAACGCAGCAGTTGGGGAGGCAGTTTTTATTGTGTTGTGTGCTTTGCGCCTGAAGGTC
TTGAAACCCCGGAAAGGATC

Product: trypsin domain-containing protein

Products: NA

Alternate protein names: Trypsin Domain Protein; Trypsin Domain-Containing Protein; Protease; Trypsin; Protease YdgD; S1/S6 Family Peptidase

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRRWVRAAALLGCLATSAAADPQGLRALETGVDAGAWEAVGRLNIGGRGFCTGALIAPDIVLTAAHCLFDKRSGAQVDPT
GIEFLAGWRKGRAAAHRQVKHAALHKDYTYGDVVAPERVRYDLALLRLVRPIRNTTITPFETAPHPAKGAQVGVVSYGRD
RAEAPSLQEVCEVLGRQEGVLITTCAVDFGSSGAPIFSFASGAAVIVSVVSAKAEVEGQNIALGTDLSGALAALHETLAR
QNRPFVRAVPALRQTTIEESRSSMGARFIRPAQ

Sequences:

>Translated_273_residues
MRRWVRAAALLGCLATSAAADPQGLRALETGVDAGAWEAVGRLNIGGRGFCTGALIAPDIVLTAAHCLFDKRSGAQVDPT
GIEFLAGWRKGRAAAHRQVKHAALHKDYTYGDVVAPERVRYDLALLRLVRPIRNTTITPFETAPHPAKGAQVGVVSYGRD
RAEAPSLQEVCEVLGRQEGVLITTCAVDFGSSGAPIFSFASGAAVIVSVVSAKAEVEGQNIALGTDLSGALAALHETLAR
QNRPFVRAVPALRQTTIEESRSSMGARFIRPAQ
>Mature_273_residues
MRRWVRAAALLGCLATSAAADPQGLRALETGVDAGAWEAVGRLNIGGRGFCTGALIAPDIVLTAAHCLFDKRSGAQVDPT
GIEFLAGWRKGRAAAHRQVKHAALHKDYTYGDVVAPERVRYDLALLRLVRPIRNTTITPFETAPHPAKGAQVGVVSYGRD
RAEAPSLQEVCEVLGRQEGVLITTCAVDFGSSGAPIFSFASGAAVIVSVVSAKAEVEGQNIALGTDLSGALAALHETLAR
QNRPFVRAVPALRQTTIEESRSSMGARFIRPAQ

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.21.- [C]

Molecular weight: Translated: 28874; Mature: 28874

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00134 TRYPSIN_HIS ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRWVRAAALLGCLATSAAADPQGLRALETGVDAGAWEAVGRLNIGGRGFCTGALIAPDI
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCEECCHHHHHHH
VLTAAHCLFDKRSGAQVDPTGIEFLAGWRKGRAAAHRQVKHAALHKDYTYGDVVAPERVR
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
YDLALLRLVRPIRNTTITPFETAPHPAKGAQVGVVSYGRDRAEAPSLQEVCEVLGRQEGV
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCE
LITTCAVDFGSSGAPIFSFASGAAVIVSVVSAKAEVEGQNIALGTDLSGALAALHETLAR
EEEEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
QNRPFVRAVPALRQTTIEESRSSMGARFIRPAQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRRWVRAAALLGCLATSAAADPQGLRALETGVDAGAWEAVGRLNIGGRGFCTGALIAPDI
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCEECCHHHHHHH
VLTAAHCLFDKRSGAQVDPTGIEFLAGWRKGRAAAHRQVKHAALHKDYTYGDVVAPERVR
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
YDLALLRLVRPIRNTTITPFETAPHPAKGAQVGVVSYGRDRAEAPSLQEVCEVLGRQEGV
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCE
LITTCAVDFGSSGAPIFSFASGAAVIVSVVSAKAEVEGQNIALGTDLSGALAALHETLAR
EEEEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
QNRPFVRAVPALRQTTIEESRSSMGARFIRPAQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA