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The map label for this gene is glcF [H]

Identifier: 110678006

GI number: 110678006

Start: 608182

End: 609507

Strand: Direct

Name: glcF [H]

Synonym: RD1_0627

Alternate gene names: 110678006

Gene position: 608182-609507 (Clockwise)

Preceding gene: 110678005

Following gene: 110678007

Centisome position: 14.71

GC content: 59.05

Gene sequence:

>1326_bases
ATGCAGACAACATTCACACCGGAGCAGATGAAAAACCCGGAAATCCAGCGCAGCAACGAGATTTTGCGCTCCTGCGTGCA
TTGCGGGTTCTGCACCGCCACCTGCCCGACCTATCAGGTGCTCGGGGATGAATTGGACAGCCCGCGCGGGCGGATTTATC
TGATCAAGGATATGCTTGAGAACGACCGTGATCCGGATGCGAAAACGGTCAAACATATTGACCGCTGCCTGTCCTGTCTT
GCCTGCATGACCACCTGCCCGTCGGGCGTGCATTACATGCATCTGGTCGATCACGCGCGCGCCTACATCGAAGAACGTTA
CAAGCGGCCGTTCAGTGACCGCGCGCTGCGTTGGGTTCTGGCGCGTATCCTGCCCTATCCCATGCGGTTCCGTCTGGCCC
TGCTGGGTGCCAAGATCGGGCGTCCTTTTGCACGGTTTATGCCGGATGCGCGGTTGCAAGCCATGCTGGAGATGGCGCCC
AAGACCATCCCGCCCGTCAGCCGCAATGACGATCCGCAGAGTTTTGCACCGGAGATTGAACGTAAAAAACGCGTGGCCCT
GATGACCGGCTGTGCGCAAAAGGCGCTGAATACCGACATCAATGACGCGACGATCCGCGTGCTGCGGCGTTTGGGCTGCG
AGGTTGTCGTGGCCAAAGGGGCGGGTTGTTGTGGCGCTCTGACCCATCACATGGGCAAGTCAGATGAAAGCCACTCAACG
GCGGCGCGCAATATTCGCGCATGGGCGCGGGAAATGGATGCGGGCGGTCTGGACGCGATTGTGATCAATACATCCGGCTG
TGGGACGACCGTGAAAGACTACGGTCATATGTTTCGCAACGATCCGGCCTTGGCAGAGGATGCCGCGCGCGTCTCGGCGA
TTGCCAAAGATGTCTCCGAAGTGCTGGTTGATCTGGACATGCCTGCCGGTGAGGACAAGGCGATGGTCGTGGGGTATCAC
GCGGCCTGCTCGCTGCAACACGGTCAACAGATCAAGACCTTCCCAAAGGATTTGTTGAAACGCGCCGGTTTTACCGTCGT
CGAGCCGCGCGATTCGCATCTGTGCTGTGGCTCTGCGGGGACATACAACCTGATGCAGCCAGAGATTTCCAAACAGCTCA
AAGCGCGCAAGGTGCAAACGCTGGAGGCGAAAAACCCGGACGTCATCGCGGCAGGTAATATCGGGTGCATGATGCAAATC
GGCTCTGGCACTGAGATTCCAGTGGTTCACAGTGTTGAATTGCTGGACTGGGCCACGGGCGGGCCGAGGCCACCGTCGCT
GGATGGCGATGCGATGCCAAAATCCGACGTGCCGATCCTGCGCTGA

Upstream 100 bases:

>100_bases
CCGGTATCGAACGGCTCTGCGCAGGTTTGCGTGCGCGCTTTGACCCGCGCGGTATCCTCAACAAGGGCCTGATGGACGCC
CCCGAAACCGAGGTCGCATA

Downstream 100 bases:

>100_bases
CCTCCGCTGAAGGGGGGCAGGACAGAAACCGCCGGCCTCATTTTTGCCCCAACCGATCTGTAGTGCTAGGCCCGATCAGA
AAGGGGTCACATGCGCAGAT

Product: glycolate oxidase, iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MQTTFTPEQMKNPEIQRSNEILRSCVHCGFCTATCPTYQVLGDELDSPRGRIYLIKDMLENDRDPDAKTVKHIDRCLSCL
ACMTTCPSGVHYMHLVDHARAYIEERYKRPFSDRALRWVLARILPYPMRFRLALLGAKIGRPFARFMPDARLQAMLEMAP
KTIPPVSRNDDPQSFAPEIERKKRVALMTGCAQKALNTDINDATIRVLRRLGCEVVVAKGAGCCGALTHHMGKSDESHST
AARNIRAWAREMDAGGLDAIVINTSGCGTTVKDYGHMFRNDPALAEDAARVSAIAKDVSEVLVDLDMPAGEDKAMVVGYH
AACSLQHGQQIKTFPKDLLKRAGFTVVEPRDSHLCCGSAGTYNLMQPEISKQLKARKVQTLEAKNPDVIAAGNIGCMMQI
GSGTEIPVVHSVELLDWATGGPRPPSLDGDAMPKSDVPILR

Sequences:

>Translated_441_residues
MQTTFTPEQMKNPEIQRSNEILRSCVHCGFCTATCPTYQVLGDELDSPRGRIYLIKDMLENDRDPDAKTVKHIDRCLSCL
ACMTTCPSGVHYMHLVDHARAYIEERYKRPFSDRALRWVLARILPYPMRFRLALLGAKIGRPFARFMPDARLQAMLEMAP
KTIPPVSRNDDPQSFAPEIERKKRVALMTGCAQKALNTDINDATIRVLRRLGCEVVVAKGAGCCGALTHHMGKSDESHST
AARNIRAWAREMDAGGLDAIVINTSGCGTTVKDYGHMFRNDPALAEDAARVSAIAKDVSEVLVDLDMPAGEDKAMVVGYH
AACSLQHGQQIKTFPKDLLKRAGFTVVEPRDSHLCCGSAGTYNLMQPEISKQLKARKVQTLEAKNPDVIAAGNIGCMMQI
GSGTEIPVVHSVELLDWATGGPRPPSLDGDAMPKSDVPILR
>Mature_441_residues
MQTTFTPEQMKNPEIQRSNEILRSCVHCGFCTATCPTYQVLGDELDSPRGRIYLIKDMLENDRDPDAKTVKHIDRCLSCL
ACMTTCPSGVHYMHLVDHARAYIEERYKRPFSDRALRWVLARILPYPMRFRLALLGAKIGRPFARFMPDARLQAMLEMAP
KTIPPVSRNDDPQSFAPEIERKKRVALMTGCAQKALNTDINDATIRVLRRLGCEVVVAKGAGCCGALTHHMGKSDESHST
AARNIRAWAREMDAGGLDAIVINTSGCGTTVKDYGHMFRNDPALAEDAARVSAIAKDVSEVLVDLDMPAGEDKAMVVGYH
AACSLQHGQQIKTFPKDLLKRAGFTVVEPRDSHLCCGSAGTYNLMQPEISKQLKARKVQTLEAKNPDVIAAGNIGCMMQI
GSGTEIPVVHSVELLDWATGGPRPPSLDGDAMPKSDVPILR

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=422, Percent_Identity=42.1800947867299, Blast_Score=335, Evalue=4e-93,
Organism=Escherichia coli, GI1786497, Length=241, Percent_Identity=26.9709543568465, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 48515; Mature: 48515

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTFTPEQMKNPEIQRSNEILRSCVHCGFCTATCPTYQVLGDELDSPRGRIYLIKDMLE
CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHCCCCCCEEEEEHHHHC
NDRDPDAKTVKHIDRCLSCLACMTTCPSGVHYMHLVDHARAYIEERYKRPFSDRALRWVL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ARILPYPMRFRLALLGAKIGRPFARFMPDARLQAMLEMAPKTIPPVSRNDDPQSFAPEIE
HHHCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
RKKRVALMTGCAQKALNTDINDATIRVLRRLGCEVVVAKGAGCCGALTHHMGKSDESHST
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCHHH
AARNIRAWAREMDAGGLDAIVINTSGCGTTVKDYGHMFRNDPALAEDAARVSAIAKDVSE
HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VLVDLDMPAGEDKAMVVGYHAACSLQHGQQIKTFPKDLLKRAGFTVVEPRDSHLCCGSAG
HHHHCCCCCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCEEECCCC
TYNLMQPEISKQLKARKVQTLEAKNPDVIAAGNIGCMMQIGSGTEIPVVHSVELLDWATG
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCEEECHHHHHHCCC
GPRPPSLDGDAMPKSDVPILR
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQTTFTPEQMKNPEIQRSNEILRSCVHCGFCTATCPTYQVLGDELDSPRGRIYLIKDMLE
CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHCCCCCCEEEEEHHHHC
NDRDPDAKTVKHIDRCLSCLACMTTCPSGVHYMHLVDHARAYIEERYKRPFSDRALRWVL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ARILPYPMRFRLALLGAKIGRPFARFMPDARLQAMLEMAPKTIPPVSRNDDPQSFAPEIE
HHHCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
RKKRVALMTGCAQKALNTDINDATIRVLRRLGCEVVVAKGAGCCGALTHHMGKSDESHST
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCHHH
AARNIRAWAREMDAGGLDAIVINTSGCGTTVKDYGHMFRNDPALAEDAARVSAIAKDVSE
HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VLVDLDMPAGEDKAMVVGYHAACSLQHGQQIKTFPKDLLKRAGFTVVEPRDSHLCCGSAG
HHHHCCCCCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCEEECCCC
TYNLMQPEISKQLKARKVQTLEAKNPDVIAAGNIGCMMQIGSGTEIPVVHSVELLDWATG
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCEEECHHHHHHCCC
GPRPPSLDGDAMPKSDVPILR
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8606183; 9278503 [H]