Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is sam [H]

Identifier: 110677637

GI number: 110677637

Start: 228998

End: 230002

Strand: Direct

Name: sam [H]

Synonym: RD1_0229

Alternate gene names: 110677637

Gene position: 228998-230002 (Clockwise)

Preceding gene: 110677636

Following gene: 110677639

Centisome position: 5.54

GC content: 58.41

Gene sequence:

>1005_bases
ATGGCACGCGGACCCATGAACCCCAATGTGAAAGGCGCATCCTTCGCGCTGATCGCTTTCGCCGTTTTTGCGTTGCATGA
CGTGATCATCAAGGTGCTGGGGTCCAGCTATTCCCCGATTCAGATCGTGTTTTTCGGCGTGGTGTTCAGCTTTCCGCTGG
CGATGCTTTACCTGTTGCGCGACACGACATCCGGCACATTGCTGCCGGTGCACCCGTGGTGGATGGCGGCGCGCACGGTC
GCGGCAGTCATTACCGGGTTTTGCGCGTTTTACGCCTTTTCCGTACTGCCGCTTGCGCAGGTCTACGCCATTCTATTTGC
CGCCCCCCTGCTGATTACAATTCTCGCCATCCCGATTCTTGGCGAACAGGTCAGATGGCAGCGCTGGCTTGCCGTCTTTA
TCGGGCTGTGCGGCGTTCTGATCGTGCTGCGCCCCGGGCAACAAGAGCTTGCCTTGGGCCATCTGGCGGCCTTGGTTTCT
GCCATTTGCGGGTCATTCGCCTCCATCATCGTGCGCAAGATCGGGCGTGAGGAGCGCACGGTGGTGATCATGCTCTATCC
GATGATGGCGAATTTTGTCGTGATGGCGGCCCTGCTGCCGCTTGTGTATCAGCCGATGCCGCTTGCCGATCTTGGAAAGC
TGGGTGTCATTGCCGTGCTTGCATGGGTCGCCGGACGTTTTCTGATCGCTGCGTATAATTCGGGTGAAGCAGTCATTGTT
GCCCCGATGCAGTATTCACAAATCCTGTGGGCGACATTCTACGGTGTCTTGTTCTTTGATGAGGTGCCGGATCTGCCCAC
GATAGCCGGTTCCGCGGTCATCATTGCCAGCGGTTTGTTTATCGTTCTGCGCGAAAGCAGCGCGCCGGGGTCCGAACGTC
CCGTTCAACGCACGCGATCACGGGCCGAAACCGGCACCTCACCGAGGGTTTCCACCTTTCTGTCGCCCGACCGCAAGTGG
GGCAGGTCGCGCAAAAAGGACACATCCAAGCCAGATGATCTGTAA

Upstream 100 bases:

>100_bases
ATGCATCCAGCGCTCTTGCTGGATCAGGGTCATCGGCCTAAAGCGTCTGGGCAGCCCGCATTTTGCGGGCCGCTTCCACG
CGTATGAAAAGGTCACCGAA

Downstream 100 bases:

>100_bases
CCTTTTCGGCGGTTTGGCACATTCTTTAAAGGGCGGGCATCAGCAGTCGACTTGGCGACCTCGGCACCTGTGTCGGATTA
CTGTCCATGACCCAATCGAC

Product: integral membrane protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLRDTTSGTLLPVHPWWMAARTV
AAVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPILGEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVS
AICGSFASIIVRKIGREERTVVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIV
APMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRSRAETGTSPRVSTFLSPDRKW
GRSRKKDTSKPDDL

Sequences:

>Translated_334_residues
MARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLRDTTSGTLLPVHPWWMAARTV
AAVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPILGEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVS
AICGSFASIIVRKIGREERTVVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIV
APMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRSRAETGTSPRVSTFLSPDRKW
GRSRKKDTSKPDDL
>Mature_333_residues
ARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLRDTTSGTLLPVHPWWMAARTVA
AVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPILGEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVSA
ICGSFASIIVRKIGREERTVVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIVA
PMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRSRAETGTSPRVSTFLSPDRKWG
RSRKKDTSKPDDL

Specific function: Transports S-adenosylmethionine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 36316; Mature: 36184

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
DTTSGTLLPVHPWWMAARTVAAVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPIL
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVSAICGSFASIIVRKIGREERT
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIV
EEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEE
APMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRS
ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCEEEEEECCCCCCCCCHHHHHHH
RAETGTSPRVSTFLSPDRKWGRSRKKDTSKPDDL
HHHCCCCCCHHHHCCCCHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
DTTSGTLLPVHPWWMAARTVAAVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPIL
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVSAICGSFASIIVRKIGREERT
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIV
EEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEE
APMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRS
ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCEEEEEECCCCCCCCCHHHHHHH
RAETGTSPRVSTFLSPDRKWGRSRKKDTSKPDDL
HHHCCCCCCHHHHCCCCHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA