| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is sam [H]
Identifier: 110677637
GI number: 110677637
Start: 228998
End: 230002
Strand: Direct
Name: sam [H]
Synonym: RD1_0229
Alternate gene names: 110677637
Gene position: 228998-230002 (Clockwise)
Preceding gene: 110677636
Following gene: 110677639
Centisome position: 5.54
GC content: 58.41
Gene sequence:
>1005_bases ATGGCACGCGGACCCATGAACCCCAATGTGAAAGGCGCATCCTTCGCGCTGATCGCTTTCGCCGTTTTTGCGTTGCATGA CGTGATCATCAAGGTGCTGGGGTCCAGCTATTCCCCGATTCAGATCGTGTTTTTCGGCGTGGTGTTCAGCTTTCCGCTGG CGATGCTTTACCTGTTGCGCGACACGACATCCGGCACATTGCTGCCGGTGCACCCGTGGTGGATGGCGGCGCGCACGGTC GCGGCAGTCATTACCGGGTTTTGCGCGTTTTACGCCTTTTCCGTACTGCCGCTTGCGCAGGTCTACGCCATTCTATTTGC CGCCCCCCTGCTGATTACAATTCTCGCCATCCCGATTCTTGGCGAACAGGTCAGATGGCAGCGCTGGCTTGCCGTCTTTA TCGGGCTGTGCGGCGTTCTGATCGTGCTGCGCCCCGGGCAACAAGAGCTTGCCTTGGGCCATCTGGCGGCCTTGGTTTCT GCCATTTGCGGGTCATTCGCCTCCATCATCGTGCGCAAGATCGGGCGTGAGGAGCGCACGGTGGTGATCATGCTCTATCC GATGATGGCGAATTTTGTCGTGATGGCGGCCCTGCTGCCGCTTGTGTATCAGCCGATGCCGCTTGCCGATCTTGGAAAGC TGGGTGTCATTGCCGTGCTTGCATGGGTCGCCGGACGTTTTCTGATCGCTGCGTATAATTCGGGTGAAGCAGTCATTGTT GCCCCGATGCAGTATTCACAAATCCTGTGGGCGACATTCTACGGTGTCTTGTTCTTTGATGAGGTGCCGGATCTGCCCAC GATAGCCGGTTCCGCGGTCATCATTGCCAGCGGTTTGTTTATCGTTCTGCGCGAAAGCAGCGCGCCGGGGTCCGAACGTC CCGTTCAACGCACGCGATCACGGGCCGAAACCGGCACCTCACCGAGGGTTTCCACCTTTCTGTCGCCCGACCGCAAGTGG GGCAGGTCGCGCAAAAAGGACACATCCAAGCCAGATGATCTGTAA
Upstream 100 bases:
>100_bases ATGCATCCAGCGCTCTTGCTGGATCAGGGTCATCGGCCTAAAGCGTCTGGGCAGCCCGCATTTTGCGGGCCGCTTCCACG CGTATGAAAAGGTCACCGAA
Downstream 100 bases:
>100_bases CCTTTTCGGCGGTTTGGCACATTCTTTAAAGGGCGGGCATCAGCAGTCGACTTGGCGACCTCGGCACCTGTGTCGGATTA CTGTCCATGACCCAATCGAC
Product: integral membrane protein, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLRDTTSGTLLPVHPWWMAARTV AAVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPILGEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVS AICGSFASIIVRKIGREERTVVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIV APMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRSRAETGTSPRVSTFLSPDRKW GRSRKKDTSKPDDL
Sequences:
>Translated_334_residues MARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLRDTTSGTLLPVHPWWMAARTV AAVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPILGEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVS AICGSFASIIVRKIGREERTVVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIV APMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRSRAETGTSPRVSTFLSPDRKW GRSRKKDTSKPDDL >Mature_333_residues ARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLRDTTSGTLLPVHPWWMAARTVA AVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPILGEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVSA ICGSFASIIVRKIGREERTVVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIVA PMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRSRAETGTSPRVSTFLSPDRKWG RSRKKDTSKPDDL
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 36316; Mature: 36184
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLR CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH DTTSGTLLPVHPWWMAARTVAAVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPIL CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVSAICGSFASIIVRKIGREERT CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE VVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIV EEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEE APMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRS ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCEEEEEECCCCCCCCCHHHHHHH RAETGTSPRVSTFLSPDRKWGRSRKKDTSKPDDL HHHCCCCCCHHHHCCCCHHHCCCCCCCCCCCCCC >Mature Secondary Structure ARGPMNPNVKGASFALIAFAVFALHDVIIKVLGSSYSPIQIVFFGVVFSFPLAMLYLLR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH DTTSGTLLPVHPWWMAARTVAAVITGFCAFYAFSVLPLAQVYAILFAAPLLITILAIPIL CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GEQVRWQRWLAVFIGLCGVLIVLRPGQQELALGHLAALVSAICGSFASIIVRKIGREERT CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE VVIMLYPMMANFVVMAALLPLVYQPMPLADLGKLGVIAVLAWVAGRFLIAAYNSGEAVIV EEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEE APMQYSQILWATFYGVLFFDEVPDLPTIAGSAVIIASGLFIVLRESSAPGSERPVQRTRS ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCEEEEEECCCCCCCCCHHHHHHH RAETGTSPRVSTFLSPDRKWGRSRKKDTSKPDDL HHHCCCCCCHHHHCCCCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA