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The map label for this gene is 110677639

Identifier: 110677639

GI number: 110677639

Start: 232120

End: 233331

Strand: Direct

Name: 110677639

Synonym: RD1_0232

Alternate gene names: NA

Gene position: 232120-233331 (Clockwise)

Preceding gene: 110677637

Following gene: 110677640

Centisome position: 5.62

GC content: 57.1

Gene sequence:

>1212_bases
ATGATTGATCAGAACAACCCCTCCATCGGCCGGTTCGACAAGTCGTTTCTTGTCCACATGATCCGAGACTTTTTCATCGT
GCTGGTGATCGTGACGGTGGTTGAGTTTTCCCTGAAGGCTGCGTTGGTCTTTTACAGTTACTACGTCGATGGGGTGGAGC
AGGCGCAGCTTGTCGCCGAGGACCTTGCCGACAATGTCCGCTCGATCATGCGCAATGAAGGAGGCCCGGTCGCTGCCCGC
ACGATGTATCCGATCCTCGAAGAAAACTGGTCCGATCTGGGCTATGTGATCGCGATTGAACCGGCCCCGGTCACCGTGGA
ATCCATCGAAGAAGGTTTTGGTTTCACACCCAAAGGCATCCCGGCGGAAAACTGGCCCGACGGGCGTTTTCAGGTCCACC
AGATCGATATCACCGCCGAAACCTTCTGCCTCGCCTGTCATACGCAGGCGTCGGTAGGCGATGTGTTGGGCACGGTGACG
GTGCGCAATTATCTCTACCGTGATTTCAGCATCTGGTTCAAAGATGTCCGCCTGACCGCCATCCTGTCTGCGGGCAAGAT
CGTTCTGCATTCCCTGCTGTTGTTCCTGATCCTGCGGGCACGGTTGGAACCGCTGATGGAATTGCGCTCTGTGATCAGCA
ACCTTGCGCGGGCTTACGGGCGACTTGACCACCGTGCCGAGATCAGAACCTCCGACGAATTTGGTGTACTGGCGCGGGAT
TTGAACCTGTTTCTGGATCGGATCACCGGCATTGTGTCCGAACTGGATCTGGTGCTGGCGAAGGTTGTGAGGGCCAATGA
CGACATCATTTCCGTGCAAGGCAGCCTGCGTGAGACGGTGGACGATGTAGTTTCGGGGATCCGGCGCTTGGAACGTGACG
CGATGCTCAGCGCGAAACGGGAACCGCGGCTGTCAAACGAATGGTTTGACGCTGTGAAAGGGTCGATCAACGCATTGGAT
GCAGCCCTCGACGGGGCGCAGGACGCGACCGCCGCGACCGATCTTCTCAACGCTCTCAGGCAGGTGGTCGCGAATGCCGA
AGGTCAGACCGAGACGAGCGAGAAAATCTACAAGAACCTCGCCGATCTGGGCGATCAGAGCGAAACGCTCAAATCCTCGA
CACTGGAAATGACGCGGCTGGAAGAACGCCTGAAATCCATCATCGAAACCTGTGGTGGGTTGGTGCGCAGACTGAAGCCC
GAAGGCAAATGA

Upstream 100 bases:

>100_bases
AGGCTTGCCGCATGCCCGCAGGCCGACGCCATGCGCGTTTCTCCTTTAAATGGCGGGTGTCAGCGCTAACTCGTTGTTCG
AGTAGCAGCGGGGCACCTGC

Downstream 100 bases:

>100_bases
TCCCGCCCCGTTCACCCGCGTCAGCGCTCAGCGAGGGCAGTCCGGGCATAAAGCGCAGCAGCAAAGAGCTTTACAACGCC
TGCCCATTTGGTATCGATCT

Product: HAMP domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MIDQNNPSIGRFDKSFLVHMIRDFFIVLVIVTVVEFSLKAALVFYSYYVDGVEQAQLVAEDLADNVRSIMRNEGGPVAAR
TMYPILEENWSDLGYVIAIEPAPVTVESIEEGFGFTPKGIPAENWPDGRFQVHQIDITAETFCLACHTQASVGDVLGTVT
VRNYLYRDFSIWFKDVRLTAILSAGKIVLHSLLLFLILRARLEPLMELRSVISNLARAYGRLDHRAEIRTSDEFGVLARD
LNLFLDRITGIVSELDLVLAKVVRANDDIISVQGSLRETVDDVVSGIRRLERDAMLSAKREPRLSNEWFDAVKGSINALD
AALDGAQDATAATDLLNALRQVVANAEGQTETSEKIYKNLADLGDQSETLKSSTLEMTRLEERLKSIIETCGGLVRRLKP
EGK

Sequences:

>Translated_403_residues
MIDQNNPSIGRFDKSFLVHMIRDFFIVLVIVTVVEFSLKAALVFYSYYVDGVEQAQLVAEDLADNVRSIMRNEGGPVAAR
TMYPILEENWSDLGYVIAIEPAPVTVESIEEGFGFTPKGIPAENWPDGRFQVHQIDITAETFCLACHTQASVGDVLGTVT
VRNYLYRDFSIWFKDVRLTAILSAGKIVLHSLLLFLILRARLEPLMELRSVISNLARAYGRLDHRAEIRTSDEFGVLARD
LNLFLDRITGIVSELDLVLAKVVRANDDIISVQGSLRETVDDVVSGIRRLERDAMLSAKREPRLSNEWFDAVKGSINALD
AALDGAQDATAATDLLNALRQVVANAEGQTETSEKIYKNLADLGDQSETLKSSTLEMTRLEERLKSIIETCGGLVRRLKP
EGK
>Mature_403_residues
MIDQNNPSIGRFDKSFLVHMIRDFFIVLVIVTVVEFSLKAALVFYSYYVDGVEQAQLVAEDLADNVRSIMRNEGGPVAAR
TMYPILEENWSDLGYVIAIEPAPVTVESIEEGFGFTPKGIPAENWPDGRFQVHQIDITAETFCLACHTQASVGDVLGTVT
VRNYLYRDFSIWFKDVRLTAILSAGKIVLHSLLLFLILRARLEPLMELRSVISNLARAYGRLDHRAEIRTSDEFGVLARD
LNLFLDRITGIVSELDLVLAKVVRANDDIISVQGSLRETVDDVVSGIRRLERDAMLSAKREPRLSNEWFDAVKGSINALD
AALDGAQDATAATDLLNALRQVVANAEGQTETSEKIYKNLADLGDQSETLKSSTLEMTRLEERLKSIIETCGGLVRRLKP
EGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44865; Mature: 44865

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50885 HAMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDQNNPSIGRFDKSFLVHMIRDFFIVLVIVTVVEFSLKAALVFYSYYVDGVEQAQLVAE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
DLADNVRSIMRNEGGPVAARTMYPILEENWSDLGYVIAIEPAPVTVESIEEGFGFTPKGI
HHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCC
PAENWPDGRFQVHQIDITAETFCLACHTQASVGDVLGTVTVRNYLYRDFSIWFKDVRLTA
CCCCCCCCCEEEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILSAGKIVLHSLLLFLILRARLEPLMELRSVISNLARAYGRLDHRAEIRTSDEFGVLARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHH
LNLFLDRITGIVSELDLVLAKVVRANDDIISVQGSLRETVDDVVSGIRRLERDAMLSAKR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
EPRLSNEWFDAVKGSINALDAALDGAQDATAATDLLNALRQVVANAEGQTETSEKIYKNL
CCCCCHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ADLGDQSETLKSSTLEMTRLEERLKSIIETCGGLVRRLKPEGK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIDQNNPSIGRFDKSFLVHMIRDFFIVLVIVTVVEFSLKAALVFYSYYVDGVEQAQLVAE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
DLADNVRSIMRNEGGPVAARTMYPILEENWSDLGYVIAIEPAPVTVESIEEGFGFTPKGI
HHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCC
PAENWPDGRFQVHQIDITAETFCLACHTQASVGDVLGTVTVRNYLYRDFSIWFKDVRLTA
CCCCCCCCCEEEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILSAGKIVLHSLLLFLILRARLEPLMELRSVISNLARAYGRLDHRAEIRTSDEFGVLARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHH
LNLFLDRITGIVSELDLVLAKVVRANDDIISVQGSLRETVDDVVSGIRRLERDAMLSAKR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
EPRLSNEWFDAVKGSINALDAALDGAQDATAATDLLNALRQVVANAEGQTETSEKIYKNL
CCCCCHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ADLGDQSETLKSSTLEMTRLEERLKSIIETCGGLVRRLKPEGK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA