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The map label for this gene is potC [H]

Identifier: 110677588

GI number: 110677588

Start: 176830

End: 177672

Strand: Direct

Name: potC [H]

Synonym: RD1_0180

Alternate gene names: 110677588

Gene position: 176830-177672 (Clockwise)

Preceding gene: 110677587

Following gene: 110677590

Centisome position: 4.28

GC content: 59.55

Gene sequence:

>843_bases
GTGCCCTACCTCACGCCCGGGCAGGTCCTGTGGCACTATACCTTCCGCGTGATCTGCGGTGCGATCCTTGTGTTTCTCAT
CACGCCGATCCTTGTGGTCATGCCGCTGAGTTTCAACGCGGAGAACTTCTTTACCTTCACCCCTGAGATGCTGCGTTTTG
ATCCGGCGGGCTATTCGCTGAAACATTACGAGGATTTCTTTACCAATTCGGACTGGCAGGGTGCCTTGGCCAATTCCATC
AAGATCGCCCCGGCGGCGACGCTGCTCTCGGTGACCTTTGGCACGCTGGCGGCCATCGGCCTTAGCCAACCGCATGTTCC
GTTCCGCCGCGCCATCATGGCCATCCTGATCTCACCGATGATCGTACCGCTCATCATCTCCGCTGCGGGCATGTATTTCT
TCTACAGCCGCATCGGCCTGCAGGGCACCTATATGGGCGTTGTGCTCGCGCATGCGGCCTTGGGTATCCCCTTTGTCATC
ATCACGGTGACGGCAACGCTGGTGGGCTTTGACAACTCGCTCACCCGTGCGGCGGCCAATATGGGCGCAAACCCGGTCAC
CACATTCTTTCGGGTGCAGATGCCGCTTATTCTGCCCGGTGTCATATCGGGGGGGTTGTTCGCCTTTATCACGTCCTTTG
ACGAAGTGGTCGTGGTGCTCTTTGTCGGTTCAGCCGGTCAGAAAACGCTGCCCTGGCAGATGTTCACAGGTCTGCGCGAA
CAGATCAGCCCGACGATTCTCGCCGTGGCGACGATCCTTGTGCTGGTGTCAATTGCGCTGCTGACGGTGGTGGAACTGCT
GCGCCGCCGCTCCGAGCGTCTGCGCGGGATGAGCCCCACGTGA

Upstream 100 bases:

>100_bases
GATGGGCGGTATTCCGGCGGGACTGATCGGGGCAGGATTCGGATGGTTTTTCGCCTGGCTGAGCTTCTGGCTCTACGAGT
CGCGCTATCGTCAGCATCTC

Downstream 100 bases:

>100_bases
CATGAACCACGTCACCGGTTTTGCACAAAAGCGTTGACGCGCCCCCCTTGCTGCCGGATCAGCGCAAGGGGGGTCGGTCA
CGCGGCACAGATCATCGCAG

Product: ABC transporter permease protein, putative

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MPYLTPGQVLWHYTFRVICGAILVFLITPILVVMPLSFNAENFFTFTPEMLRFDPAGYSLKHYEDFFTNSDWQGALANSI
KIAPAATLLSVTFGTLAAIGLSQPHVPFRRAIMAILISPMIVPLIISAAGMYFFYSRIGLQGTYMGVVLAHAALGIPFVI
ITVTATLVGFDNSLTRAAANMGANPVTTFFRVQMPLILPGVISGGLFAFITSFDEVVVVLFVGSAGQKTLPWQMFTGLRE
QISPTILAVATILVLVSIALLTVVELLRRRSERLRGMSPT

Sequences:

>Translated_280_residues
MPYLTPGQVLWHYTFRVICGAILVFLITPILVVMPLSFNAENFFTFTPEMLRFDPAGYSLKHYEDFFTNSDWQGALANSI
KIAPAATLLSVTFGTLAAIGLSQPHVPFRRAIMAILISPMIVPLIISAAGMYFFYSRIGLQGTYMGVVLAHAALGIPFVI
ITVTATLVGFDNSLTRAAANMGANPVTTFFRVQMPLILPGVISGGLFAFITSFDEVVVVLFVGSAGQKTLPWQMFTGLRE
QISPTILAVATILVLVSIALLTVVELLRRRSERLRGMSPT
>Mature_279_residues
PYLTPGQVLWHYTFRVICGAILVFLITPILVVMPLSFNAENFFTFTPEMLRFDPAGYSLKHYEDFFTNSDWQGALANSIK
IAPAATLLSVTFGTLAAIGLSQPHVPFRRAIMAILISPMIVPLIISAAGMYFFYSRIGLQGTYMGVVLAHAALGIPFVII
TVTATLVGFDNSLTRAAANMGANPVTTFFRVQMPLILPGVISGGLFAFITSFDEVVVVLFVGSAGQKTLPWQMFTGLREQ
ISPTILAVATILVLVSIALLTVVELLRRRSERLRGMSPT

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=229, Percent_Identity=25.764192139738, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787081, Length=259, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787714, Length=236, Percent_Identity=30.5084745762712, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30525; Mature: 30394

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYLTPGQVLWHYTFRVICGAILVFLITPILVVMPLSFNAENFFTFTPEMLRFDPAGYSL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHEECCCCCCH
KHYEDFFTNSDWQGALANSIKIAPAATLLSVTFGTLAAIGLSQPHVPFRRAIMAILISPM
HHHHHHHCCCCCCCHHHCCEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
IVPLIISAAGMYFFYSRIGLQGTYMGVVLAHAALGIPFVIITVTATLVGFDNSLTRAAAN
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHH
MGANPVTTFFRVQMPLILPGVISGGLFAFITSFDEVVVVLFVGSAGQKTLPWQMFTGLRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHH
QISPTILAVATILVLVSIALLTVVELLRRRSERLRGMSPT
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PYLTPGQVLWHYTFRVICGAILVFLITPILVVMPLSFNAENFFTFTPEMLRFDPAGYSL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHEECCCCCCH
KHYEDFFTNSDWQGALANSIKIAPAATLLSVTFGTLAAIGLSQPHVPFRRAIMAILISPM
HHHHHHHCCCCCCCHHHCCEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
IVPLIISAAGMYFFYSRIGLQGTYMGVVLAHAALGIPFVIITVTATLVGFDNSLTRAAAN
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHH
MGANPVTTFFRVQMPLILPGVISGGLFAFITSFDEVVVVLFVGSAGQKTLPWQMFTGLRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHH
QISPTILAVATILVLVSIALLTVVELLRRRSERLRGMSPT
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]