| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is crtC [H]
Identifier: 110677530
GI number: 110677530
Start: 116012
End: 117031
Strand: Direct
Name: crtC [H]
Synonym: RD1_0116
Alternate gene names: 110677530
Gene position: 116012-117031 (Clockwise)
Preceding gene: 110677529
Following gene: 110677531
Centisome position: 2.81
GC content: 64.71
Gene sequence:
>1020_bases ATGGCTCGCGGGGGGCGGCACCCATCCGGGGGCGGGGGTCCCGATGGCGACACTCTCCGCCCGGCACGCGGCAGAGGCGA TCTTGCGCGCCCAAACTTCAACGTCGCTGTCGGCCCCAACGGCTACGCCTGGTGGTATGTCGACGGGCTGAGCGATTGCG GCAGCCGCGCGGTCTCCGTCATCGGGTTTATCGGATCGGTGTTTTCGCCGTGGTATCGTTGGTCGGGGCGCAAATGCCCG CAGGATCACGTCTGCATCAATGTCGCCACCTACGGGCCCGGCGGACGGTTCACCATGACGGACCGGGGGCAAAGCGCGCT GCGCCAGACCGCCTCCCGGCTGCAGGTTGGTCCGTCGATGATGCGCTGGGATGGCAATGATCTGGTTATCGAAATCAACG AGGTGTCCAGCCCGCCGCTGATCAACCGCATCAGAGGCGAAATCCGCGTCACCCCTTCGGCCATCACCAATGTCGAACTG CCCCTGACCCCGGATGGCGCCCACGTCTGGCGCCCCTTCGCGCCCCGCGCACGCATCAGCGTCAACATCGACCGCCCCGG CTGGCAATGGCAGGGCGAGGGCTATTTCGACGCGAATTTCGGGTCCCGCGCGCTGGAAGAAGATTTCAGCTACTGGACAT GGGGCCGCTTTCCGACCTCGGGCGGTGCCACCTGTTTCTACGACGCGACGCGTCTTGATGGTACGGAACTGTCGGCAGGC TTCGCCTTTGATCATGACGGAACCGCGCGCAAGATCGAGATGCCCCCGAAAACCGGGTTTCGCCGCACGCTCTGGGCGGT CAAACGCGAAACGCGCAGCGATGCAGGCTACAAACCCCATCAGGTGATGAGCATGCTCGACGCTCCGTTTTACTCCCGCT CTGCCGTACGCACCAGGATCGACGGCGAGGAAACAACCGGCGTGCACGAAGCGCTTGATCTGACCCGGTTCCGATCGCCG CTCTTGAAACCCATGCTTGCCGTGCGCGTGCCGCGGCGGAAAAACTGGAGCTGGGACTGA
Upstream 100 bases:
>100_bases TGCTCTTTCCCGAAACGCTCGGCGCGCTTTACGGCCAGACGCCGCACGGGCTGACAGCGGCACTCCAGCGCCCGACAGCG CAGACGCCGATTGCGGGACT
Downstream 100 bases:
>100_bases CCGACCGCCCTTCGGGGCAAGACAGGCGTTCGGTAGTGCTGGAAACTCTCAGGTTGCGCTCTTAACATAATATTTCTACT CAGGGTGTATTGGATCGTTT
Product: hydroxyneurosporene dehydrogenase
Products: NA
Alternate protein names: Hydroxyneurosporene synthase [H]
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MARGGRHPSGGGGPDGDTLRPARGRGDLARPNFNVAVGPNGYAWWYVDGLSDCGSRAVSVIGFIGSVFSPWYRWSGRKCP QDHVCINVATYGPGGRFTMTDRGQSALRQTASRLQVGPSMMRWDGNDLVIEINEVSSPPLINRIRGEIRVTPSAITNVEL PLTPDGAHVWRPFAPRARISVNIDRPGWQWQGEGYFDANFGSRALEEDFSYWTWGRFPTSGGATCFYDATRLDGTELSAG FAFDHDGTARKIEMPPKTGFRRTLWAVKRETRSDAGYKPHQVMSMLDAPFYSRSAVRTRIDGEETTGVHEALDLTRFRSP LLKPMLAVRVPRRKNWSWD
Sequences:
>Translated_339_residues MARGGRHPSGGGGPDGDTLRPARGRGDLARPNFNVAVGPNGYAWWYVDGLSDCGSRAVSVIGFIGSVFSPWYRWSGRKCP QDHVCINVATYGPGGRFTMTDRGQSALRQTASRLQVGPSMMRWDGNDLVIEINEVSSPPLINRIRGEIRVTPSAITNVEL PLTPDGAHVWRPFAPRARISVNIDRPGWQWQGEGYFDANFGSRALEEDFSYWTWGRFPTSGGATCFYDATRLDGTELSAG FAFDHDGTARKIEMPPKTGFRRTLWAVKRETRSDAGYKPHQVMSMLDAPFYSRSAVRTRIDGEETTGVHEALDLTRFRSP LLKPMLAVRVPRRKNWSWD >Mature_338_residues ARGGRHPSGGGGPDGDTLRPARGRGDLARPNFNVAVGPNGYAWWYVDGLSDCGSRAVSVIGFIGSVFSPWYRWSGRKCPQ DHVCINVATYGPGGRFTMTDRGQSALRQTASRLQVGPSMMRWDGNDLVIEINEVSSPPLINRIRGEIRVTPSAITNVELP LTPDGAHVWRPFAPRARISVNIDRPGWQWQGEGYFDANFGSRALEEDFSYWTWGRFPTSGGATCFYDATRLDGTELSAGF AFDHDGTARKIEMPPKTGFRRTLWAVKRETRSDAGYKPHQVMSMLDAPFYSRSAVRTRIDGEETTGVHEALDLTRFRSPL LKPMLAVRVPRRKNWSWD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010791 [H]
Pfam domain/function: PF07143 CrtC [H]
EC number: NA
Molecular weight: Translated: 37799; Mature: 37668
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARGGRHPSGGGGPDGDTLRPARGRGDLARPNFNVAVGPNGYAWWYVDGLSDCGSRAVSV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHH IGFIGSVFSPWYRWSGRKCPQDHVCINVATYGPGGRFTMTDRGQSALRQTASRLQVGPSM HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHCCCHH MRWDGNDLVIEINEVSSPPLINRIRGEIRVTPSAITNVELPLTPDGAHVWRPFAPRARIS EEECCCEEEEEEECCCCCHHHHHCCCEEEECCHHHCEEEEECCCCCCCEECCCCCCCEEE VNIDRPGWQWQGEGYFDANFGSRALEEDFSYWTWGRFPTSGGATCFYDATRLDGTELSAG EEECCCCCEECCCEEEECCCCCHHHHHCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCC FAFDHDGTARKIEMPPKTGFRRTLWAVKRETRSDAGYKPHQVMSMLDAPFYSRSAVRTRI EEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHEEC DGEETTGVHEALDLTRFRSPLLKPMLAVRVPRRKNWSWD CCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ARGGRHPSGGGGPDGDTLRPARGRGDLARPNFNVAVGPNGYAWWYVDGLSDCGSRAVSV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHH IGFIGSVFSPWYRWSGRKCPQDHVCINVATYGPGGRFTMTDRGQSALRQTASRLQVGPSM HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHCCCHH MRWDGNDLVIEINEVSSPPLINRIRGEIRVTPSAITNVELPLTPDGAHVWRPFAPRARIS EEECCCEEEEEEECCCCCHHHHHCCCEEEECCHHHCEEEEECCCCCCCEECCCCCCCEEE VNIDRPGWQWQGEGYFDANFGSRALEEDFSYWTWGRFPTSGGATCFYDATRLDGTELSAG EEECCCCCEECCCEEEECCCCCHHHHHCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCC FAFDHDGTARKIEMPPKTGFRRTLWAVKRETRSDAGYKPHQVMSMLDAPFYSRSAVRTRI EEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHEEC DGEETTGVHEALDLTRFRSPLLKPMLAVRVPRRKNWSWD CCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7721699; 1612412 [H]