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The map label for this gene is crtD [H]

Identifier: 110677529

GI number: 110677529

Start: 114612

End: 116162

Strand: Direct

Name: crtD [H]

Synonym: RD1_0115

Alternate gene names: 110677529

Gene position: 114612-116162 (Clockwise)

Preceding gene: 110677519

Following gene: 110677530

Centisome position: 2.77

GC content: 64.09

Gene sequence:

>1551_bases
ATGCATGTTTCAACCGCCCCCCTCATTCCCGACCGGCCACGTGCTATTGTGATTGGTGCAGGCATCGCGGGTCTTGCCGC
CGCTTTGCGTCTGGCGACCAGCGGCATGCAGGTCACCTTGCTGGAACGGCACAATCATCCCGGCGGCAAGATCAGAACCC
TGAGCAGCGCCGCCGGACCCGTCGATGCCGGCCCCACCGTTTTGACGATGCGTCATGTTTTTGACGATCTGTTTGCCTGC
GCGGGCACGCGGCTCAAGGACCATGTGACGCTTGTGCCACAAAGCATCCTCGCGCGGCATTTCTGGCCCGACGGCAGCAA
GCTGGACCTGCACGCAGACCCGCTCTTGAGCCGCGATGCCATCGCCGCCTTTGCGGGCAACACATCCGCCGATGAGTTCA
TGCAATTCAACCGACGCACCCAACAGCTGTTCGATGCCTTTGATGCGCCGATGATGCAGGCCCCCAACCCAAGGATGCGC
GACCTTGTCCCGCATGTGCTCAAGCAACCGCAGTTGATTGCCGCCATGGCCCCGCTGTCGACGTTGAAAACATCGCTGGG
CCGCGCCTTCAGCGACCCGAGGCTTGCGCAGCTATTTGGCCGCTATGCCACCTATGTGGGCGGTGCGCCCCACCTCAGCC
CGGCGATCCTGTCGCTGATCTGGCAGGCAGAGGCCGCAGGCGTCTGGGTCGTCGAAGGAGGCATGCACAAACTGGCCCAC
GCCATCGCCAAACTGGCGCGACACGCAGGTGTCGACATCCGCTACAACACCCATGTGGACCGCATCAAAACAGTGGGCGG
GCGCGCCGTGGGCGTAGAAATCGACGGCACCTATCTTTTGGAAGCCGAGGCGATCCTTTACGCGGGCGATCCGCGCGCGC
TCGCCACCGGCAGCATGGGTGCAGACCTCAGGGTCGTGGCCCCGCAGACCGTCAAACTGCCCCGATCCTTCTCCGCCCGC
GTGCACAGCTTTGCCGCGACCCCGCAGGGACGTGATCTGACCCATCACAACGTCTTCTTTGCTGCGGACCCGGATTGCGA
GTTCAAAGAGCTGATGGCAGGGCGCATGCCCGCGGATCCCACGCTATACCTCTGTGCCGAAGACCGAGGTCACGGCGCCG
ACATCCCCACCCTTGAGCGTTTCGAGATGATCTCGAACGCGCCCGCAACAGAGACACACACTCCCCCACAGGAGATTGAA
AAATGGCACCAGCAGATCATGCAACGGATGGCGGATATGGGCGTGACTTTCACGCCGATGCCGACAACAGAGACGCTCAC
GACGCCGCAGGATTTCGCGATGCTCTTTCCCGAAACGCTCGGCGCGCTTTACGGCCAGACGCCGCACGGGCTGACAGCGG
CACTCCAGCGCCCGACAGCGCAGACGCCGATTGCGGGACTATGGCTCGCGGGGGGCGGCACCCATCCGGGGGCGGGGGTC
CCGATGGCGACACTCTCCGCCCGGCACGCGGCAGAGGCGATCTTGCGCGCCCAAACTTCAACGTCGCTGTCGGCCCCAAC
GGCTACGCCTGGTGGTATGTCGACGGGCTGA

Upstream 100 bases:

>100_bases
TGCCCATATGGATGTCCTTTCGAGCGCAAGTGTCAGTATTTTCCGACACTCAAGTGTAAATCATACTGGACACTTTCGCC
ATTCGAGTCAACAATCCCTT

Downstream 100 bases:

>100_bases
GCGATTGCGGCAGCCGCGCGGTCTCCGTCATCGGGTTTATCGGATCGGTGTTTTCGCCGTGGTATCGTTGGTCGGGGCGC
AAATGCCCGCAGGATCACGT

Product: methoxyneurosporene dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MHVSTAPLIPDRPRAIVIGAGIAGLAAALRLATSGMQVTLLERHNHPGGKIRTLSSAAGPVDAGPTVLTMRHVFDDLFAC
AGTRLKDHVTLVPQSILARHFWPDGSKLDLHADPLLSRDAIAAFAGNTSADEFMQFNRRTQQLFDAFDAPMMQAPNPRMR
DLVPHVLKQPQLIAAMAPLSTLKTSLGRAFSDPRLAQLFGRYATYVGGAPHLSPAILSLIWQAEAAGVWVVEGGMHKLAH
AIAKLARHAGVDIRYNTHVDRIKTVGGRAVGVEIDGTYLLEAEAILYAGDPRALATGSMGADLRVVAPQTVKLPRSFSAR
VHSFAATPQGRDLTHHNVFFAADPDCEFKELMAGRMPADPTLYLCAEDRGHGADIPTLERFEMISNAPATETHTPPQEIE
KWHQQIMQRMADMGVTFTPMPTTETLTTPQDFAMLFPETLGALYGQTPHGLTAALQRPTAQTPIAGLWLAGGGTHPGAGV
PMATLSARHAAEAILRAQTSTSLSAPTATPGGMSTG

Sequences:

>Translated_516_residues
MHVSTAPLIPDRPRAIVIGAGIAGLAAALRLATSGMQVTLLERHNHPGGKIRTLSSAAGPVDAGPTVLTMRHVFDDLFAC
AGTRLKDHVTLVPQSILARHFWPDGSKLDLHADPLLSRDAIAAFAGNTSADEFMQFNRRTQQLFDAFDAPMMQAPNPRMR
DLVPHVLKQPQLIAAMAPLSTLKTSLGRAFSDPRLAQLFGRYATYVGGAPHLSPAILSLIWQAEAAGVWVVEGGMHKLAH
AIAKLARHAGVDIRYNTHVDRIKTVGGRAVGVEIDGTYLLEAEAILYAGDPRALATGSMGADLRVVAPQTVKLPRSFSAR
VHSFAATPQGRDLTHHNVFFAADPDCEFKELMAGRMPADPTLYLCAEDRGHGADIPTLERFEMISNAPATETHTPPQEIE
KWHQQIMQRMADMGVTFTPMPTTETLTTPQDFAMLFPETLGALYGQTPHGLTAALQRPTAQTPIAGLWLAGGGTHPGAGV
PMATLSARHAAEAILRAQTSTSLSAPTATPGGMSTG
>Mature_516_residues
MHVSTAPLIPDRPRAIVIGAGIAGLAAALRLATSGMQVTLLERHNHPGGKIRTLSSAAGPVDAGPTVLTMRHVFDDLFAC
AGTRLKDHVTLVPQSILARHFWPDGSKLDLHADPLLSRDAIAAFAGNTSADEFMQFNRRTQQLFDAFDAPMMQAPNPRMR
DLVPHVLKQPQLIAAMAPLSTLKTSLGRAFSDPRLAQLFGRYATYVGGAPHLSPAILSLIWQAEAAGVWVVEGGMHKLAH
AIAKLARHAGVDIRYNTHVDRIKTVGGRAVGVEIDGTYLLEAEAILYAGDPRALATGSMGADLRVVAPQTVKLPRSFSAR
VHSFAATPQGRDLTHHNVFFAADPDCEFKELMAGRMPADPTLYLCAEDRGHGADIPTLERFEMISNAPATETHTPPQEIE
KWHQQIMQRMADMGVTFTPMPTTETLTTPQDFAMLFPETLGALYGQTPHGLTAALQRPTAQTPIAGLWLAGGGTHPGAGV
PMATLSARHAAEAILRAQTSTSLSAPTATPGGMSTG

Specific function: Converts hydroxyneurosporene to demethylspheroidene or methoxyneurosporene to spheroidene [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 55126; Mature: 55126

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS00982 PHYTOENE_DH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVSTAPLIPDRPRAIVIGAGIAGLAAALRLATSGMQVTLLERHNHPGGKIRTLSSAAGP
CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCC
VDAGPTVLTMRHVFDDLFACAGTRLKDHVTLVPQSILARHFWPDGSKLDLHADPLLSRDA
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHEECCHHHHHHHCCCCCCEEEECCCCCCCHHH
IAAFAGNTSADEFMQFNRRTQQLFDAFDAPMMQAPNPRMRDLVPHVLKQPQLIAAMAPLS
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
TLKTSLGRAFSDPRLAQLFGRYATYVGGAPHLSPAILSLIWQAEAAGVWVVEGGMHKLAH
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
AIAKLARHAGVDIRYNTHVDRIKTVGGRAVGVEIDGTYLLEAEAILYAGDPRALATGSMG
HHHHHHHHCCCCEEECCCHHHHHHCCCEEEEEEECCEEEEEEEEEEEECCCCEEECCCCC
ADLRVVAPQTVKLPRSFSARVHSFAATPQGRDLTHHNVFFAADPDCEFKELMAGRMPADP
CCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCC
TLYLCAEDRGHGADIPTLERFEMISNAPATETHTPPQEIEKWHQQIMQRMADMGVTFTPM
EEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCC
PTTETLTTPQDFAMLFPETLGALYGQTPHGLTAALQRPTAQTPIAGLWLAGGGTHPGAGV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
PMATLSARHAAEAILRAQTSTSLSAPTATPGGMSTG
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHVSTAPLIPDRPRAIVIGAGIAGLAAALRLATSGMQVTLLERHNHPGGKIRTLSSAAGP
CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCC
VDAGPTVLTMRHVFDDLFACAGTRLKDHVTLVPQSILARHFWPDGSKLDLHADPLLSRDA
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHEECCHHHHHHHCCCCCCEEEECCCCCCCHHH
IAAFAGNTSADEFMQFNRRTQQLFDAFDAPMMQAPNPRMRDLVPHVLKQPQLIAAMAPLS
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
TLKTSLGRAFSDPRLAQLFGRYATYVGGAPHLSPAILSLIWQAEAAGVWVVEGGMHKLAH
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
AIAKLARHAGVDIRYNTHVDRIKTVGGRAVGVEIDGTYLLEAEAILYAGDPRALATGSMG
HHHHHHHHCCCCEEECCCHHHHHHCCCEEEEEEECCEEEEEEEEEEEECCCCEEECCCCC
ADLRVVAPQTVKLPRSFSARVHSFAATPQGRDLTHHNVFFAADPDCEFKELMAGRMPADP
CCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCC
TLYLCAEDRGHGADIPTLERFEMISNAPATETHTPPQEIEKWHQQIMQRMADMGVTFTPM
EEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCC
PTTETLTTPQDFAMLFPETLGALYGQTPHGLTAALQRPTAQTPIAGLWLAGGGTHPGAGV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
PMATLSARHAAEAILRAQTSTSLSAPTATPGGMSTG
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2747617; 2144293 [H]