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The map label for this gene is yliC [C]

Identifier: 110635968

GI number: 110635968

Start: 3934182

End: 3935123

Strand: Reverse

Name: yliC [C]

Synonym: Meso_3642

Alternate gene names: 110635968

Gene position: 3935123-3934182 (Counterclockwise)

Preceding gene: 110635969

Following gene: 110635967

Centisome position: 89.18

GC content: 61.36

Gene sequence:

>942_bases
ATGCTCGGCCATTTCATCAAGGGACTGACCACCGCCATCCCCGTGATGGCGGTGGTCGCGATCATCGTCTTCCTGCTGCT
GTTCCTCGCGCCCGGAGATCCCGCCGCCATCATGGCGGGCGAAAATGCGACGGCCGATACGATCGCGCAGCTTCGCGTTG
CGCTAGGCGTGGATCAACCGATCCATCTCCGCTTCTGGAATTGGCTCAGCCCGATCCTGCACGGCGATCTGGGCAACTCC
ATCTATTGGCGTCAGAGTGTCGTGTCGCTGATCGGACAACGTGCCGGTCCCACCATATCGCTGGCGGTGACAACGTTGTT
CGTTTCAGTCTGCACTGCGGTCACTCTTGGCGTCATTGCTGCGGCGCGCGTCAACTCACGGCTCGACCGCGCCATCATGG
GTTTTGCCGTCATCGCCTTCTCGGTGCCTACATTCGTCGTCGGCTATCTGCTGATGTTCGTCTTCGCGGTCCGGCTCGGC
TATCTGCCTGTGCAAGGATACAAGCCCATAAGCGCCGGTTTCTGGCCGTGGCTCAGCCATCTCATCCTGCCGTCGCTGAC
CCTCGGCACCGTCTATGTCGCACTGATCGCCCGCATCACACGCGCCTCTATGCTGGAGGTGCTCTCGGAGGATTATATCC
GTACCGCGCGTGCCAAAGGCGTACCGCGCCGGAGCATCCTTTTCCGGCACGCGCTGAAGAATGCCGCTGTGCCGATCGCC
ACCATAGTCGGCAACGGCATCGCGATCCTCATTAGCGGCGTGGTGATCACCGAGACCGTGTTCAACGTGCCGGGGATCGG
ACGGCTCGTGGTCGACGCCATCGCGCGGCGCGACTATCCGATCATCCAAGGCGTGACGCTGCTGTTTGCCGGCGTCTATG
TCTGCATCAACCTGCTGGTCGACATCTCCTATCGGCTCTTTGACCCGAGGATTCGCTACTGA

Upstream 100 bases:

>100_bases
ATTGGGTGCAACCGGTCGCATATCGCAGCAACCTGGACGGCTTCGTTAGCATTCCCGGCGTACTTGCCTTCTGGAACGTC
AAGCGAGTCTGAACACGCCG

Downstream 100 bases:

>100_bases
TGCTCCGCCTCAGCAGATCGCCTGGGCTGTTCCTGTGCGTTGGGTTGCTGTCTGTCTGCTTGGCCGGCGCGCTGTTTGCG
CCCTTTCTCGCGAATGACCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLGHFIKGLTTAIPVMAVVAIIVFLLLFLAPGDPAAIMAGENATADTIAQLRVALGVDQPIHLRFWNWLSPILHGDLGNS
IYWRQSVVSLIGQRAGPTISLAVTTLFVSVCTAVTLGVIAAARVNSRLDRAIMGFAVIAFSVPTFVVGYLLMFVFAVRLG
YLPVQGYKPISAGFWPWLSHLILPSLTLGTVYVALIARITRASMLEVLSEDYIRTARAKGVPRRSILFRHALKNAAVPIA
TIVGNGIAILISGVVITETVFNVPGIGRLVVDAIARRDYPIIQGVTLLFAGVYVCINLLVDISYRLFDPRIRY

Sequences:

>Translated_313_residues
MLGHFIKGLTTAIPVMAVVAIIVFLLLFLAPGDPAAIMAGENATADTIAQLRVALGVDQPIHLRFWNWLSPILHGDLGNS
IYWRQSVVSLIGQRAGPTISLAVTTLFVSVCTAVTLGVIAAARVNSRLDRAIMGFAVIAFSVPTFVVGYLLMFVFAVRLG
YLPVQGYKPISAGFWPWLSHLILPSLTLGTVYVALIARITRASMLEVLSEDYIRTARAKGVPRRSILFRHALKNAAVPIA
TIVGNGIAILISGVVITETVFNVPGIGRLVVDAIARRDYPIIQGVTLLFAGVYVCINLLVDISYRLFDPRIRY
>Mature_313_residues
MLGHFIKGLTTAIPVMAVVAIIVFLLLFLAPGDPAAIMAGENATADTIAQLRVALGVDQPIHLRFWNWLSPILHGDLGNS
IYWRQSVVSLIGQRAGPTISLAVTTLFVSVCTAVTLGVIAAARVNSRLDRAIMGFAVIAFSVPTFVVGYLLMFVFAVRLG
YLPVQGYKPISAGFWPWLSHLILPSLTLGTVYVALIARITRASMLEVLSEDYIRTARAKGVPRRSILFRHALKNAAVPIA
TIVGNGIAILISGVVITETVFNVPGIGRLVVDAIARRDYPIIQGVTLLFAGVYVCINLLVDISYRLFDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=44.0894568690096, Blast_Score=257, Evalue=6e-70,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=36.4985163204748, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=35.8730158730159, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=36.1904761904762, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1787761, Length=318, Percent_Identity=37.1069182389937, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1788504, Length=285, Percent_Identity=29.8245614035088, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=28.6764705882353, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33936; Mature: 33936

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGHFIKGLTTAIPVMAVVAIIVFLLLFLAPGDPAAIMAGENATADTIAQLRVALGVDQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
IHLRFWNWLSPILHGDLGNSIYWRQSVVSLIGQRAGPTISLAVTTLFVSVCTAVTLGVIA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AARVNSRLDRAIMGFAVIAFSVPTFVVGYLLMFVFAVRLGYLPVQGYKPISAGFWPWLSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
LILPSLTLGTVYVALIARITRASMLEVLSEDYIRTARAKGVPRRSILFRHALKNAAVPIA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
TIVGNGIAILISGVVITETVFNVPGIGRLVVDAIARRDYPIIQGVTLLFAGVYVCINLLV
HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
DISYRLFDPRIRY
HHHHHHCCCCCCC
>Mature Secondary Structure
MLGHFIKGLTTAIPVMAVVAIIVFLLLFLAPGDPAAIMAGENATADTIAQLRVALGVDQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
IHLRFWNWLSPILHGDLGNSIYWRQSVVSLIGQRAGPTISLAVTTLFVSVCTAVTLGVIA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AARVNSRLDRAIMGFAVIAFSVPTFVVGYLLMFVFAVRLGYLPVQGYKPISAGFWPWLSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
LILPSLTLGTVYVALIARITRASMLEVLSEDYIRTARAKGVPRRSILFRHALKNAAVPIA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
TIVGNGIAILISGVVITETVFNVPGIGRLVVDAIARRDYPIIQGVTLLFAGVYVCINLLV
HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
DISYRLFDPRIRY
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]