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The map label for this gene is yliD [C]

Identifier: 110635967

GI number: 110635967

Start: 3933364

End: 3934182

Strand: Reverse

Name: yliD [C]

Synonym: Meso_3641

Alternate gene names: 110635967

Gene position: 3934182-3933364 (Counterclockwise)

Preceding gene: 110635968

Following gene: 110635966

Centisome position: 89.16

GC content: 65.45

Gene sequence:

>819_bases
ATGCTCCGCCTCAGCAGATCGCCTGGGCTGTTCCTGTGCGTTGGGTTGCTGTCTGTCTGCTTGGCCGGCGCGCTGTTTGC
GCCCTTTCTCGCGAATGACCCGCTGATGACCACGCCGGCGAACCGGCTGATGCCTCCGGGACCGGATGCCTGGTTCGGCA
CCGATCACCTGGGACGCGACATCTTCGCGCGCTCGCTCTACGGCGCGCGCGTCTCGCTCAGTGTCGGCTTCGCAGTGGCC
ATGCTGGCGGTCGGTATCGGTCTGACGCTGGGCGTCCTGGCAGGATACTGGCGCTGGCTTGATCGGCTTCTCATGCGCGT
CATGGACGGCGTAATGGCCATTCCCTCCATCCTGCTGGCCATCGCGCTCGTGGCGCTGCACGAGCCGGGGCTGGGAATCG
TGGTCATCGCCATCGCTATACCCGAGATACCGCGCGTGGCGCGACTGGCGCGTGCGGTGATCCTTTCCGTCCGCGAGCTG
CCCTATGTCGAGGCGGCTACGGCATCCGGCATCCGGACTCCCCGCGTCCTGTTGCGCTACATCATGCCCAGTACCTATGC
GCCGCTGATGGTGCAGGGCACCTACATCGTCGCGTCGGCGATCATCATCGAGTCGAGCCTGTCCTTCCTCGGCGCAGGCC
TACCCCCCGAGGTTCCGACCTGGGGCAACATGATCGCCTCAAGCCGGCTCTACATATCGACGGCGCCCTGGACGGTGTTC
GTGCCCGGCTCCTTCCTGGCGGTTGTCATCTACTCGATCAATCTCATCGGTGACGCATTACGCGATCACCTGGACGTGCG
CATGGCCGGCCCCGGCTAG

Upstream 100 bases:

>100_bases
TCATCCAAGGCGTGACGCTGCTGTTTGCCGGCGTCTATGTCTGCATCAACCTGCTGGTCGACATCTCCTATCGGCTCTTT
GACCCGAGGATTCGCTACTG

Downstream 100 bases:

>100_bases
TGGAGCCGGCACCGGAGGGAAAGTTCCGGAGCTTGGACGAGCGTCTCGTAAGACCCCCGCTTCTTCCAGAGTCGCCGGCA
CCTGTCTGGTGCGACTTTCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLRLSRSPGLFLCVGLLSVCLAGALFAPFLANDPLMTTPANRLMPPGPDAWFGTDHLGRDIFARSLYGARVSLSVGFAVA
MLAVGIGLTLGVLAGYWRWLDRLLMRVMDGVMAIPSILLAIALVALHEPGLGIVVIAIAIPEIPRVARLARAVILSVREL
PYVEAATASGIRTPRVLLRYIMPSTYAPLMVQGTYIVASAIIIESSLSFLGAGLPPEVPTWGNMIASSRLYISTAPWTVF
VPGSFLAVVIYSINLIGDALRDHLDVRMAGPG

Sequences:

>Translated_272_residues
MLRLSRSPGLFLCVGLLSVCLAGALFAPFLANDPLMTTPANRLMPPGPDAWFGTDHLGRDIFARSLYGARVSLSVGFAVA
MLAVGIGLTLGVLAGYWRWLDRLLMRVMDGVMAIPSILLAIALVALHEPGLGIVVIAIAIPEIPRVARLARAVILSVREL
PYVEAATASGIRTPRVLLRYIMPSTYAPLMVQGTYIVASAIIIESSLSFLGAGLPPEVPTWGNMIASSRLYISTAPWTVF
VPGSFLAVVIYSINLIGDALRDHLDVRMAGPG
>Mature_272_residues
MLRLSRSPGLFLCVGLLSVCLAGALFAPFLANDPLMTTPANRLMPPGPDAWFGTDHLGRDIFARSLYGARVSLSVGFAVA
MLAVGIGLTLGVLAGYWRWLDRLLMRVMDGVMAIPSILLAIALVALHEPGLGIVVIAIAIPEIPRVARLARAVILSVREL
PYVEAATASGIRTPRVLLRYIMPSTYAPLMVQGTYIVASAIIIESSLSFLGAGLPPEVPTWGNMIASSRLYISTAPWTVF
VPGSFLAVVIYSINLIGDALRDHLDVRMAGPG

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=269, Percent_Identity=38.6617100371747, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787760, Length=249, Percent_Identity=37.7510040160643, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=36.0995850622407, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787549, Length=260, Percent_Identity=34.6153846153846, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789964, Length=217, Percent_Identity=39.1705069124424, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787498, Length=228, Percent_Identity=33.7719298245614, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788505, Length=248, Percent_Identity=27.8225806451613, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29018; Mature: 29018

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLSRSPGLFLCVGLLSVCLAGALFAPFLANDPLMTTPANRLMPPGPDAWFGTDHLGRD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCCCCCCCCCCHHHHHH
IFARSLYGARVSLSVGFAVAMLAVGIGLTLGVLAGYWRWLDRLLMRVMDGVMAIPSILLA
HHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALVALHEPGLGIVVIAIAIPEIPRVARLARAVILSVRELPYVEAATASGIRTPRVLLRY
HHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
IMPSTYAPLMVQGTYIVASAIIIESSLSFLGAGLPPEVPTWGNMIASSRLYISTAPWTVF
HHCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEEEECCEEEE
VPGSFLAVVIYSINLIGDALRDHLDVRMAGPG
ECHHHHHHHHHHHHHHHHHHHHHCCEEECCCC
>Mature Secondary Structure
MLRLSRSPGLFLCVGLLSVCLAGALFAPFLANDPLMTTPANRLMPPGPDAWFGTDHLGRD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCCCCCCCCCCHHHHHH
IFARSLYGARVSLSVGFAVAMLAVGIGLTLGVLAGYWRWLDRLLMRVMDGVMAIPSILLA
HHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALVALHEPGLGIVVIAIAIPEIPRVARLARAVILSVRELPYVEAATASGIRTPRVLLRY
HHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
IMPSTYAPLMVQGTYIVASAIIIESSLSFLGAGLPPEVPTWGNMIASSRLYISTAPWTVF
HHCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEEEECCEEEE
VPGSFLAVVIYSINLIGDALRDHLDVRMAGPG
ECHHHHHHHHHHHHHHHHHHHHHCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]