| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
Click here to switch to the map view.
The map label for this gene is gpmA
Identifier: 110635917
GI number: 110635917
Start: 3872542
End: 3873162
Strand: Reverse
Name: gpmA
Synonym: Meso_3591
Alternate gene names: 110635917
Gene position: 3873162-3872542 (Counterclockwise)
Preceding gene: 110635918
Following gene: 110635911
Centisome position: 87.78
GC content: 61.67
Gene sequence:
>621_bases ATGTCCGGAACGCTGATCCTTGTTCGCCACGGCCAGAGCGAATGGAACCTGAAGAACCTGTTCACCGGCTGGCGCGATCC CGGCCTATCCGAGCTTGGCCATGAAGAAGCCACATCGGCGGGACGCAAGATCAAGGACAGGGGGCTTAGACCGGACATCG CCTTCACCTCGGTGCTTTCGCGCGCCAAAGTCACCAATACGCATATTCTGGAGGTCCTCGGATTGCCCGCTCTGGAGACG ATCGAGGACGTGGCGCTCAACGAGCGGGATTACGGCGATCTCTCTGGCCTCAACAAGGACGACGCGCGAAAGAAATGGGG CGAGGAGCAGGTGCATATCTGGCGCCGCTCTTATGATATTCCGCCTCCCGGCGGCGAGAGCCTGCGCGACACGGGTGCCC GCGTCTGGCCCTACTATTTGCGGGAAATCCTCCCGCAGGTGCTGCGGGGCAAGACAGTGCTGGTGAGCGCTCACGGCAAT TCGCTACGCTCGCTGGCGATGGTTCTGGACGGGCTTTCCGGCGAGGAGATCGTCAAGATGGAGATCGCCACAGGCGTTCC GATCGTCTACCGGCTCAACCCCGATTCTACCGTGGCGTCGAAGGAGATCCTGGAGGGCTGA
Upstream 100 bases:
>100_bases GGCCGCGCTCTGGGCGCGCGGCAGGAAGCCGGGCCTCCACTCCATGCTCGATGTACTGGGCTTCACCGAAAATTCCGACC AAGCCAGATAGGGAAGAACC
Downstream 100 bases:
>100_bases TGCGCCGCAGCCCGTCTGCGGTGCACGGGGTCTCAAACGGACCCATCTAGTTCAGCGGAGCCGGATGCACGAAGGGCCAG GGCGATGCCTCCGAGCCACG
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MSGTLILVRHGQSEWNLKNLFTGWRDPGLSELGHEEATSAGRKIKDRGLRPDIAFTSVLSRAKVTNTHILEVLGLPALET IEDVALNERDYGDLSGLNKDDARKKWGEEQVHIWRRSYDIPPPGGESLRDTGARVWPYYLREILPQVLRGKTVLVSAHGN SLRSLAMVLDGLSGEEIVKMEIATGVPIVYRLNPDSTVASKEILEG
Sequences:
>Translated_206_residues MSGTLILVRHGQSEWNLKNLFTGWRDPGLSELGHEEATSAGRKIKDRGLRPDIAFTSVLSRAKVTNTHILEVLGLPALET IEDVALNERDYGDLSGLNKDDARKKWGEEQVHIWRRSYDIPPPGGESLRDTGARVWPYYLREILPQVLRGKTVLVSAHGN SLRSLAMVLDGLSGEEIVKMEIATGVPIVYRLNPDSTVASKEILEG >Mature_205_residues SGTLILVRHGQSEWNLKNLFTGWRDPGLSELGHEEATSAGRKIKDRGLRPDIAFTSVLSRAKVTNTHILEVLGLPALETI EDVALNERDYGDLSGLNKDDARKKWGEEQVHIWRRSYDIPPPGGESLRDTGARVWPYYLREILPQVLRGKTVLVSAHGNS LRSLAMVLDGLSGEEIVKMEIATGVPIVYRLNPDSTVASKEILEG
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily
Homologues:
Organism=Homo sapiens, GI50593010, Length=218, Percent_Identity=44.4954128440367, Blast_Score=175, Evalue=3e-44, Organism=Homo sapiens, GI4505753, Length=218, Percent_Identity=44.4954128440367, Blast_Score=174, Evalue=4e-44, Organism=Homo sapiens, GI71274132, Length=218, Percent_Identity=42.2018348623853, Blast_Score=163, Evalue=1e-40, Organism=Homo sapiens, GI4502445, Length=220, Percent_Identity=40, Blast_Score=154, Evalue=6e-38, Organism=Homo sapiens, GI40353764, Length=220, Percent_Identity=40, Blast_Score=154, Evalue=6e-38, Organism=Homo sapiens, GI310129614, Length=160, Percent_Identity=43.125, Blast_Score=115, Evalue=3e-26, Organism=Escherichia coli, GI1786970, Length=216, Percent_Identity=42.5925925925926, Blast_Score=161, Evalue=3e-41, Organism=Saccharomyces cerevisiae, GI6322697, Length=214, Percent_Identity=42.5233644859813, Blast_Score=159, Evalue=3e-40, Organism=Saccharomyces cerevisiae, GI6320183, Length=270, Percent_Identity=28.1481481481481, Blast_Score=92, Evalue=8e-20, Organism=Saccharomyces cerevisiae, GI6324516, Length=265, Percent_Identity=28.3018867924528, Blast_Score=91, Evalue=1e-19, Organism=Drosophila melanogaster, GI85725270, Length=219, Percent_Identity=43.8356164383562, Blast_Score=173, Evalue=7e-44, Organism=Drosophila melanogaster, GI85725272, Length=219, Percent_Identity=43.8356164383562, Blast_Score=173, Evalue=7e-44, Organism=Drosophila melanogaster, GI24650981, Length=219, Percent_Identity=43.8356164383562, Blast_Score=173, Evalue=7e-44, Organism=Drosophila melanogaster, GI24646216, Length=217, Percent_Identity=41.4746543778802, Blast_Score=169, Evalue=2e-42, Organism=Drosophila melanogaster, GI28571815, Length=220, Percent_Identity=35.4545454545455, Blast_Score=124, Evalue=3e-29, Organism=Drosophila melanogaster, GI28571817, Length=220, Percent_Identity=35.4545454545455, Blast_Score=124, Evalue=4e-29, Organism=Drosophila melanogaster, GI24648979, Length=220, Percent_Identity=35.4545454545455, Blast_Score=124, Evalue=4e-29,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): GPMA_MESSB (Q11CB5)
Other databases:
- EMBL: CP000390 - RefSeq: YP_676125.1 - ProteinModelPortal: Q11CB5 - SMR: Q11CB5 - STRING: Q11CB5 - GeneID: 4182190 - GenomeReviews: CP000390_GR - KEGG: mes:Meso_3591 - NMPDR: fig|266779.1.peg.945 - eggNOG: COG0588 - HOGENOM: HBG658938 - OMA: TGWKDPD - PhylomeDB: Q11CB5 - ProtClustDB: PRK01295 - BioCyc: MSP266779:MESO_3591-MONOMER - GO: GO:0006096 - HAMAP: MF_01039 - InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 - PANTHER: PTHR11931 - SMART: SM00855 - TIGRFAMs: TIGR01258
Pfam domain/function: PF00300 PGAM
EC number: =5.4.2.1
Molecular weight: Translated: 22849; Mature: 22718
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS00175 PG_MUTASE
Important sites: ACT_SITE 10-10 ACT_SITE 158-158
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGTLILVRHGQSEWNLKNLFTGWRDPGLSELGHEEATSAGRKIKDRGLRPDIAFTSVLS CCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHH RAKVTNTHILEVLGLPALETIEDVALNERDYGDLSGLNKDDARKKWGEEQVHIWRRSYDI HHHHCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCC PPPGGESLRDTGARVWPYYLREILPQVLRGKTVLVSAHGNSLRSLAMVLDGLSGEEIVKM CCCCCCCHHHCCCEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEE EIATGVPIVYRLNPDSTVASKEILEG EECCCCEEEEEECCCCHHHHHHHHCC >Mature Secondary Structure SGTLILVRHGQSEWNLKNLFTGWRDPGLSELGHEEATSAGRKIKDRGLRPDIAFTSVLS CCCEEEEECCCCCCCHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHH RAKVTNTHILEVLGLPALETIEDVALNERDYGDLSGLNKDDARKKWGEEQVHIWRRSYDI HHHHCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCC PPPGGESLRDTGARVWPYYLREILPQVLRGKTVLVSAHGNSLRSLAMVLDGLSGEEIVKM CCCCCCCHHHCCCEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEE EIATGVPIVYRLNPDSTVASKEILEG EECCCCEEEEEECCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA