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The map label for this gene is yggS [H]

Identifier: 110635537

GI number: 110635537

Start: 3476428

End: 3477105

Strand: Reverse

Name: yggS [H]

Synonym: Meso_3208

Alternate gene names: 110635537

Gene position: 3477105-3476428 (Counterclockwise)

Preceding gene: 110635541

Following gene: 110635531

Centisome position: 78.8

GC content: 62.83

Gene sequence:

>678_bases
ATGAATGAGGCCGCTCAAAACTTATCTAAGGTCAGGGACCGGATGGTCCAAGCCGTCCGCGAGGCGGGCCGTGCGTCCAA
AGACGTCGCTCTCGTCGCCGTCTCGAAAACCTTTGCGGCCGACGAAATCCTTCCCGTGATCGAGGCGGGCCAGCGGGTCT
TCGGCGAAAACCGCGTGCAGGAAGCGCAGGGCAAATGGCCGGGGCTCAAGGAAGCCTTTCCCGATATAGAACTTCATCTG
ATCGGGCCGCTCCAGTCCAACAAGGCGAAGGAGGCAGTGGCGCTTTTCGACGTGATCGAGACAGTGGACCGGGAAAAGAT
CGCCGCCGCGCTCGCTGCCGAGATGGAAAAGCAGGGCCGCCGCCTTCGGCTCTATGTCCAGGTCAATACGGGTCTCGAAC
CACAGAAAGCGGGCATCGACCCGCGCGAGACCGCAGCCTTTGTGGCGCGTTGCCGCGAAGTCCATGGGCTTGAGATCGAG
GGGCTGATGTGCATCCCGCCCCTGGACGAAAACCCCGGTCCTCATTTCGCTCTGCTCGAGAAGCTGGCGCGCGAGGCCGG
CGTGGAGAAACTCTCGATGGGCATGTCCGGGGACTTTGAGACCGCTATCGCCTTCGGGGCGACCAGCATTCGCGTGGGCT
CGGCGATCTTCGGCAGCCGGGCTTATTCCGCGGGTTGA

Upstream 100 bases:

>100_bases
AATTTCCGGCGGACCTTCACCACGGTTTGTGACGAGCGTCAACTCCGTGACCTGCGATTTACGCCGGCATGGAAAGCGTT
CAGAGGATTTCGCCCAGCTC

Downstream 100 bases:

>100_bases
ATCAAGCGGCCAGGCGGCTGTGTCGTGGTTATCGCCGCTGCGCTTCGCTGTGGTTCAGGCTCCCACGCGCCAGCGATCAA
CCCCAAGCGCCTCAAACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNEAAQNLSKVRDRMVQAVREAGRASKDVALVAVSKTFAADEILPVIEAGQRVFGENRVQEAQGKWPGLKEAFPDIELHL
IGPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGRRLRLYVQVNTGLEPQKAGIDPRETAAFVARCREVHGLEIE
GLMCIPPLDENPGPHFALLEKLAREAGVEKLSMGMSGDFETAIAFGATSIRVGSAIFGSRAYSAG

Sequences:

>Translated_225_residues
MNEAAQNLSKVRDRMVQAVREAGRASKDVALVAVSKTFAADEILPVIEAGQRVFGENRVQEAQGKWPGLKEAFPDIELHL
IGPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGRRLRLYVQVNTGLEPQKAGIDPRETAAFVARCREVHGLEIE
GLMCIPPLDENPGPHFALLEKLAREAGVEKLSMGMSGDFETAIAFGATSIRVGSAIFGSRAYSAG
>Mature_225_residues
MNEAAQNLSKVRDRMVQAVREAGRASKDVALVAVSKTFAADEILPVIEAGQRVFGENRVQEAQGKWPGLKEAFPDIELHL
IGPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGRRLRLYVQVNTGLEPQKAGIDPRETAAFVARCREVHGLEIE
GLMCIPPLDENPGPHFALLEKLAREAGVEKLSMGMSGDFETAIAFGATSIRVGSAIFGSRAYSAG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=243, Percent_Identity=38.2716049382716, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=39.2241379310345, Blast_Score=150, Evalue=8e-38,
Organism=Caenorhabditis elegans, GI17533025, Length=222, Percent_Identity=40.990990990991, Blast_Score=120, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=216, Percent_Identity=34.2592592592593, Blast_Score=87, Evalue=2e-18,
Organism=Drosophila melanogaster, GI45550861, Length=212, Percent_Identity=37.2641509433962, Blast_Score=117, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24311; Mature: 24311

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEAAQNLSKVRDRMVQAVREAGRASKDVALVAVSKTFAADEILPVIEAGQRVFGENRVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCHHHHH
EAQGKWPGLKEAFPDIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGR
HHCCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RLRLYVQVNTGLEPQKAGIDPRETAAFVARCREVHGLEIEGLMCIPPLDENPGPHFALLE
EEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH
KLAREAGVEKLSMGMSGDFETAIAFGATSIRVGSAIFGSRAYSAG
HHHHHHCHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNEAAQNLSKVRDRMVQAVREAGRASKDVALVAVSKTFAADEILPVIEAGQRVFGENRVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCHHHHH
EAQGKWPGLKEAFPDIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGR
HHCCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RLRLYVQVNTGLEPQKAGIDPRETAAFVARCREVHGLEIEGLMCIPPLDENPGPHFALLE
EEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH
KLAREAGVEKLSMGMSGDFETAIAFGATSIRVGSAIFGSRAYSAG
HHHHHHCHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]