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The map label for this gene is hpcR [H]

Identifier: 110634804

GI number: 110634804

Start: 2640346

End: 2640810

Strand: Direct

Name: hpcR [H]

Synonym: Meso_2463

Alternate gene names: 110634804

Gene position: 2640346-2640810 (Clockwise)

Preceding gene: 110634803

Following gene: 110634807

Centisome position: 59.84

GC content: 60.65

Gene sequence:

>465_bases
ATGAAGAAGCAGGAAATCAAGGACGGCTTCGGCCTGTACACGACGCGGAGAACTCTCCCGATGGCGCTCCTGCGCGCCCG
CGAGGTTGTAATGGAACGGTTCCGTCCCCTGCTCGGCGATTACGGGTTGACCGAGCAGCAGTGGCGCGTGTTGCGCGTCC
TCAACGAGGTCGACGAGATGGACGCCACCAAGCTTGCCAGGCAAGCAAGTGTGCTGTTGCCGTCGCTGACCCGGATTATC
AAGCTTCTGGTAAGTCGTGGCTTGATCGAAACGCGGAAGGACCCCGAGGATAGCCGCCGCGCTCTGGCCCGACTGACATC
GGAAGGGCGGAACCTGATCTTCGGCGTGGCGCCGGACAGCGTGAAGATTTACCGCCAGATCGAGGCACTTTACGGCGCGG
ACCGCTTGTCTCACCTTCTCGACGAACTTGAGCTTCTCATCAACGCGCTCGAAACCGAGGCTTAA

Upstream 100 bases:

>100_bases
TCGATCTGCGCATTTATCCATATGGCTTGCAAGCTGCTCCGCGTTGCAACTTTGTTTTCTAACGAGTTAACTGAAGTGTG
CAAATATCGCGGGAGTGGCG

Downstream 100 bases:

>100_bases
GATAGAGATTATTCATCGCAGTCGATCCCGTGAGCCAGTTCACCGATCGCGCCTCCGGTCGGTCATCCGTGGTGGTATTA
ATCGTTACCCGCCGAAGCTG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKKQEIKDGFGLYTTRRTLPMALLRAREVVMERFRPLLGDYGLTEQQWRVLRVLNEVDEMDATKLARQASVLLPSLTRII
KLLVSRGLIETRKDPEDSRRALARLTSEGRNLIFGVAPDSVKIYRQIEALYGADRLSHLLDELELLINALETEA

Sequences:

>Translated_154_residues
MKKQEIKDGFGLYTTRRTLPMALLRAREVVMERFRPLLGDYGLTEQQWRVLRVLNEVDEMDATKLARQASVLLPSLTRII
KLLVSRGLIETRKDPEDSRRALARLTSEGRNLIFGVAPDSVKIYRQIEALYGADRLSHLLDELELLINALETEA
>Mature_154_residues
MKKQEIKDGFGLYTTRRTLPMALLRAREVVMERFRPLLGDYGLTEQQWRVLRVLNEVDEMDATKLARQASVLLPSLTRII
KLLVSRGLIETRKDPEDSRRALARLTSEGRNLIFGVAPDSVKIYRQIEALYGADRLSHLLDELELLINALETEA

Specific function: Repressor for the homoprotocatechuate catabolic pathway hpc operon [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012712
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17663; Mature: 17663

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQEIKDGFGLYTTRRTLPMALLRAREVVMERFRPLLGDYGLTEQQWRVLRVLNEVDEM
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
DATKLARQASVLLPSLTRIIKLLVSRGLIETRKDPEDSRRALARLTSEGRNLIFGVAPDS
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCH
VKIYRQIEALYGADRLSHLLDELELLINALETEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKQEIKDGFGLYTTRRTLPMALLRAREVVMERFRPLLGDYGLTEQQWRVLRVLNEVDEM
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
DATKLARQASVLLPSLTRIIKLLVSRGLIETRKDPEDSRRALARLTSEGRNLIFGVAPDS
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCH
VKIYRQIEALYGADRLSHLLDELELLINALETEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8384293; 8550403 [H]