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The map label for this gene is yijO [C]

Identifier: 110634807

GI number: 110634807

Start: 2643001

End: 2643948

Strand: Direct

Name: yijO [C]

Synonym: Meso_2466

Alternate gene names: 110634807

Gene position: 2643001-2643948 (Clockwise)

Preceding gene: 110634804

Following gene: 110634811

Centisome position: 59.9

GC content: 57.81

Gene sequence:

>948_bases
TTGAAAAAGGTAAAACGAGAATGGAGGCCCCACCATGGACAAAGAACACAATTCGCTTGTACTTTTTCCGGCATGATCAT
GAGAACTGATGTCCCCGCTTTCTTCGTCTACGGCGAGCCAAGCCGCGCTCTGGATGTCGGCTTTCTTCACGTAGAGACCG
TGATGGAGCGAAAAAGCCTGCATCTTGGCCATGTCGCGCCGCACCAGCACCCCCTAATGGGACAAATTAGCTATTGGTTC
AAAGGAGGCGGGACATACCGAATAGAGGACATGACTTGGAATTTTTCGGCTCCCACCATCAGTTTTGTGCCCAGCAACGT
GGTGCATGGTTTCGATGTCGATGAGCAATCGGACGCAACCGTCATCTCAATCTCGGACGATCTATTACGGGCCGCGGCTC
CGCATGTGGATCTCAGACTAGATGTGCCCGTGCTGATTTCGGGAGAACGACCTGACGACAACTGGACGAAGCTGGACGCG
CTTTTCAACATGATTGCGGATGAGTACCGCGCGGGCGCGGGCGCCAGCGAGAAAGTGCTCGTGGGATTGGTATCGGTTGT
GCTTTCAGTGATGGGGCGCCTTGGCGGGAGCAGCGGCTTCGATACCGCTTCGCCCACGGTCGCGCTGGGCATGGCGCTGC
GGCGGGCGATCGACCAGCACTACAAGGAGGACTGGCCCGTGCGCCGCTATGTGGAATTGCTGGCGACGACACCGCATCTT
TTGGACAAGTCCGCCCGGGAGGTCTTCGGAAAAACCGTCAAGGAAATGGTGCTTGAGCGGCGGCTTCTGGAGGCCAAGCG
GCTGCTCAAATTCACTATTCGGCCTGTCGAAGATATTGGCCGCGCGATCGGTTTTGACGATCCCGCCTATTTCTCACGGT
TCTTCCGCAAGCGCACGGGCGAAGCCCCCGCCGCGTGGCGCCGGCGGCATCTGGGAACCAACGCTTGA

Upstream 100 bases:

>100_bases
CGGCCATCGCGCAGACTTTCGAGATATTCGGCCCCCGTGAACGGGCGGGTTTTGTCGGTCCGATAATCCTCTGCTCGCAT
GGCGCAATCCTCCCTTAGCG

Downstream 100 bases:

>100_bases
ATTCTTTCATGTGTTTGAAAAAGCGAGAGTGGCACGAGAGGCAAGCAGATATCGGCAGCTATTTCCGCTTTCCCTATGCG
GCTATCCCTGGCCCGTCTTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator PobR; PobR Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKKVKREWRPHHGQRTQFACTFSGMIMRTDVPAFFVYGEPSRALDVGFLHVETVMERKSLHLGHVAPHQHPLMGQISYWF
KGGGTYRIEDMTWNFSAPTISFVPSNVVHGFDVDEQSDATVISISDDLLRAAAPHVDLRLDVPVLISGERPDDNWTKLDA
LFNMIADEYRAGAGASEKVLVGLVSVVLSVMGRLGGSSGFDTASPTVALGMALRRAIDQHYKEDWPVRRYVELLATTPHL
LDKSAREVFGKTVKEMVLERRLLEAKRLLKFTIRPVEDIGRAIGFDDPAYFSRFFRKRTGEAPAAWRRRHLGTNA

Sequences:

>Translated_315_residues
MKKVKREWRPHHGQRTQFACTFSGMIMRTDVPAFFVYGEPSRALDVGFLHVETVMERKSLHLGHVAPHQHPLMGQISYWF
KGGGTYRIEDMTWNFSAPTISFVPSNVVHGFDVDEQSDATVISISDDLLRAAAPHVDLRLDVPVLISGERPDDNWTKLDA
LFNMIADEYRAGAGASEKVLVGLVSVVLSVMGRLGGSSGFDTASPTVALGMALRRAIDQHYKEDWPVRRYVELLATTPHL
LDKSAREVFGKTVKEMVLERRLLEAKRLLKFTIRPVEDIGRAIGFDDPAYFSRFFRKRTGEAPAAWRRRHLGTNA
>Mature_315_residues
MKKVKREWRPHHGQRTQFACTFSGMIMRTDVPAFFVYGEPSRALDVGFLHVETVMERKSLHLGHVAPHQHPLMGQISYWF
KGGGTYRIEDMTWNFSAPTISFVPSNVVHGFDVDEQSDATVISISDDLLRAAAPHVDLRLDVPVLISGERPDDNWTKLDA
LFNMIADEYRAGAGASEKVLVGLVSVVLSVMGRLGGSSGFDTASPTVALGMALRRAIDQHYKEDWPVRRYVELLATTPHL
LDKSAREVFGKTVKEMVLERRLLEAKRLLKFTIRPVEDIGRAIGFDDPAYFSRFFRKRTGEAPAAWRRRHLGTNA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35477; Mature: 35477

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVKREWRPHHGQRTQFACTFSGMIMRTDVPAFFVYGEPSRALDVGFLHVETVMERKSL
CCCCHHHCCCCCCCCCEEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
HLGHVAPHQHPLMGQISYWFKGGGTYRIEDMTWNFSAPTISFVPSNVVHGFDVDEQSDAT
CCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCE
VISISDDLLRAAAPHVDLRLDVPVLISGERPDDNWTKLDALFNMIADEYRAGAGASEKVL
EEEECHHHHHHHCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
VGLVSVVLSVMGRLGGSSGFDTASPTVALGMALRRAIDQHYKEDWPVRRYVELLATTPHL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH
LDKSAREVFGKTVKEMVLERRLLEAKRLLKFTIRPVEDIGRAIGFDDPAYFSRFFRKRTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCC
EAPAAWRRRHLGTNA
CCCHHHHHHHCCCCC
>Mature Secondary Structure
MKKVKREWRPHHGQRTQFACTFSGMIMRTDVPAFFVYGEPSRALDVGFLHVETVMERKSL
CCCCHHHCCCCCCCCCEEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
HLGHVAPHQHPLMGQISYWFKGGGTYRIEDMTWNFSAPTISFVPSNVVHGFDVDEQSDAT
CCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCE
VISISDDLLRAAAPHVDLRLDVPVLISGERPDDNWTKLDALFNMIADEYRAGAGASEKVL
EEEECHHHHHHHCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
VGLVSVVLSVMGRLGGSSGFDTASPTVALGMALRRAIDQHYKEDWPVRRYVELLATTPHL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH
LDKSAREVFGKTVKEMVLERRLLEAKRLLKFTIRPVEDIGRAIGFDDPAYFSRFFRKRTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCC
EAPAAWRRRHLGTNA
CCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA