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The map label for this gene is lpcC [H]

Identifier: 110634466

GI number: 110634466

Start: 2273939

End: 2275027

Strand: Reverse

Name: lpcC [H]

Synonym: Meso_2117

Alternate gene names: 110634466

Gene position: 2275027-2273939 (Counterclockwise)

Preceding gene: 110634467

Following gene: 110634465

Centisome position: 51.56

GC content: 64.28

Gene sequence:

>1089_bases
ATGGGGGCTCATGCCGGTCCGGCTTCCGCCGCCGGTCACCTTAATATCCACGATGTGGAGGTGGTGGCGCCAAACCTGAA
GCGCCACCTCTCCGGCGTCACCAGCACGATTGTCCAACTCATCCCGCTTCAGGCGCGGGATCTTGGGATTGCCGCCTTCG
GGCCGGGACTGCCTTCCAACCTTCCCAAAATGCGCTGGTGGCAGCTGCCGGCGCTGCTTTCGCGGCCAAAGCGCAGATCC
TTCCGGATTTGGCATGCGCGCCGCAATGTCGAGATGGTGACAGGGCTGATCCTGAGGGATATCTTGCGCGCGCCCATGCG
CCTCGTCTTCACCTCCGCCGCTCAGCGCCACCATAAGCCGTTCACGCGATGGCTGATCCGCCGCATGGATGCGGTCGTGG
CCACCAGCGCGCGCTCGGGTTCATTCCTCGAAGTGCCGCACCGGGTGATTATGCACGGGGTGGACACGGAGCAGTTTCAT
CCGCCGCGCGGAACGGATGACGCATGGGAATCCACAGGGCTTCCCGGCCGCCATGGTATCGGCTGCTTCGGACGTATCCG
GCATCAGAAGGGTACGGATCTGTTCGTACAGTCCATGATCGAGCTTCTGCCGAAATATCCGGACTGGACCGCGGTGGTTC
TCGGCCGCGCGACCGTGGAACACAAAGCTTTCGCGGATGAGCTCGAAGCCCGCGTGCGCGCGGCTGGCCTGTCGGAGCGC
ATTTTCTTCCTCGGCGAAGTGCCGGACGTGCATCCCTGGTATAGACGCCTCAGCCTCTATGTGGCGCCCTCGCGCAACGA
GGGCTTTGGGCTGACACCCCTGGAGGCGATGGCATCCGGAACCGCCGTGGTGGCGAGCGACGCGGGCGCTTACGAGGAAA
TCGTCATATCTGGCGAAACCGGCATGGTGGTGCCCGCCGGTGACGGCGCTGCCCTTACCGCCGCGATCGAGCCCTATCTA
GCCGACCCGGCACTCGCCGAACGGCACGGAGAAGCTGGGCGCGCGCATGCCGTGAATAATTTTGCGCTCGCCGGGGAAGC
CGCCGCGCTGCGCGAGGTTTATGAAAGCCTCTGGGATGGCGAAAAATGA

Upstream 100 bases:

>100_bases
TGATCGGGAAGGGCGTTGGCGACTTGATCGAGGTCAACGCGCCGGGTGGCGCGCGTGGCTATGAGGTCTTGCGCGTTCAG
TACGGCTGAGCTGGACGGTC

Downstream 100 bases:

>100_bases
AGGTCGAGGCGTTCGTCATCCATCTCGCCCGCGCCACGGGGCGCGCGCCCCAGGTGGAGCGTTTGCGCCAGAATCTTACG
ATTCCGGTCACGGTCATAGA

Product: glycosyl transferase, group 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MGAHAGPASAAGHLNIHDVEVVAPNLKRHLSGVTSTIVQLIPLQARDLGIAAFGPGLPSNLPKMRWWQLPALLSRPKRRS
FRIWHARRNVEMVTGLILRDILRAPMRLVFTSAAQRHHKPFTRWLIRRMDAVVATSARSGSFLEVPHRVIMHGVDTEQFH
PPRGTDDAWESTGLPGRHGIGCFGRIRHQKGTDLFVQSMIELLPKYPDWTAVVLGRATVEHKAFADELEARVRAAGLSER
IFFLGEVPDVHPWYRRLSLYVAPSRNEGFGLTPLEAMASGTAVVASDAGAYEEIVISGETGMVVPAGDGAALTAAIEPYL
ADPALAERHGEAGRAHAVNNFALAGEAAALREVYESLWDGEK

Sequences:

>Translated_362_residues
MGAHAGPASAAGHLNIHDVEVVAPNLKRHLSGVTSTIVQLIPLQARDLGIAAFGPGLPSNLPKMRWWQLPALLSRPKRRS
FRIWHARRNVEMVTGLILRDILRAPMRLVFTSAAQRHHKPFTRWLIRRMDAVVATSARSGSFLEVPHRVIMHGVDTEQFH
PPRGTDDAWESTGLPGRHGIGCFGRIRHQKGTDLFVQSMIELLPKYPDWTAVVLGRATVEHKAFADELEARVRAAGLSER
IFFLGEVPDVHPWYRRLSLYVAPSRNEGFGLTPLEAMASGTAVVASDAGAYEEIVISGETGMVVPAGDGAALTAAIEPYL
ADPALAERHGEAGRAHAVNNFALAGEAAALREVYESLWDGEK
>Mature_361_residues
GAHAGPASAAGHLNIHDVEVVAPNLKRHLSGVTSTIVQLIPLQARDLGIAAFGPGLPSNLPKMRWWQLPALLSRPKRRSF
RIWHARRNVEMVTGLILRDILRAPMRLVFTSAAQRHHKPFTRWLIRRMDAVVATSARSGSFLEVPHRVIMHGVDTEQFHP
PRGTDDAWESTGLPGRHGIGCFGRIRHQKGTDLFVQSMIELLPKYPDWTAVVLGRATVEHKAFADELEARVRAAGLSERI
FFLGEVPDVHPWYRRLSLYVAPSRNEGFGLTPLEAMASGTAVVASDAGAYEEIVISGETGMVVPAGDGAALTAAIEPYLA
DPALAERHGEAGRAHAVNNFALAGEAAALREVYESLWDGEK

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 39584; Mature: 39453

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAHAGPASAAGHLNIHDVEVVAPNLKRHLSGVTSTIVQLIPLQARDLGIAAFGPGLPSN
CCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCCC
LPKMRWWQLPALLSRPKRRSFRIWHARRNVEMVTGLILRDILRAPMRLVFTSAAQRHHKP
CCCCHHHHCHHHHCCCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
FTRWLIRRMDAVVATSARSGSFLEVPHRVIMHGVDTEQFHPPRGTDDAWESTGLPGRHGI
HHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHCCCCCHHCCCCCCCCCHHHHCCCCCCCCC
GCFGRIRHQKGTDLFVQSMIELLPKYPDWTAVVLGRATVEHKAFADELEARVRAAGLSER
CHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCE
IFFLGEVPDVHPWYRRLSLYVAPSRNEGFGLTPLEAMASGTAVVASDAGAYEEIVISGET
EEEECCCCCCCHHHHEEEEEECCCCCCCCCCCHHHHHHCCCEEEECCCCCCEEEEEECCC
GMVVPAGDGAALTAAIEPYLADPALAERHGEAGRAHAVNNFALAGEAAALREVYESLWDG
CEEEECCCCCEEEEECCCHHCCCHHHHHCCCCCCCHHCCCCEECCHHHHHHHHHHHHHCC
EK
CC
>Mature Secondary Structure 
GAHAGPASAAGHLNIHDVEVVAPNLKRHLSGVTSTIVQLIPLQARDLGIAAFGPGLPSN
CCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCCC
LPKMRWWQLPALLSRPKRRSFRIWHARRNVEMVTGLILRDILRAPMRLVFTSAAQRHHKP
CCCCHHHHCHHHHCCCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
FTRWLIRRMDAVVATSARSGSFLEVPHRVIMHGVDTEQFHPPRGTDDAWESTGLPGRHGI
HHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHCCCCCHHCCCCCCCCCHHHHCCCCCCCCC
GCFGRIRHQKGTDLFVQSMIELLPKYPDWTAVVLGRATVEHKAFADELEARVRAAGLSER
CHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCE
IFFLGEVPDVHPWYRRLSLYVAPSRNEGFGLTPLEAMASGTAVVASDAGAYEEIVISGET
EEEECCCCCCCHHHHEEEEEECCCCCCCCCCCHHHHHHCCCEEEECCCCCCEEEEEECCC
GMVVPAGDGAALTAAIEPYLADPALAERHGEAGRAHAVNNFALAGEAAALREVYESLWDG
CEEEECCCCCEEEEECCCHHCCCHHHHHCCCCCCCHHCCCCEECCHHHHHHHHHHHHHCC
EK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9756877 [H]