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The map label for this gene is 110634342

Identifier: 110634342

GI number: 110634342

Start: 2134922

End: 2135584

Strand: Direct

Name: 110634342

Synonym: Meso_1992

Alternate gene names: NA

Gene position: 2134922-2135584 (Clockwise)

Preceding gene: 110634338

Following gene: 110634343

Centisome position: 48.38

GC content: 57.01

Gene sequence:

>663_bases
ATGGGGCAGCGATTTTCCTTTCCCTCGCGGAAGCAGGCCTCGCCTGGTGCTTCTAAATCAAACTCGGAACCAGGTGGTTA
TCTCATGATGCGCTATATCTTGGTTGGCATCATCCTTCTTACAGCGGGGGCGTTCGGCGCCATCGCTTTCAATTTCTACA
GCGGCCAGAACCAGGCGGTTGCGTTCGGCGCGCCCTTCGAGCTTATCGATCACGAGGGGCAGCCGATCACCGAGAAGGCG
CTCCAGGGGCGCCCCACCGCCCTCTTCTTCGGTTTCACCCATTGTCCCGACGTTTGTCCGACCACTCTTTTCGAGATGCA
GGGCTGGCTGGATCAGCTTGGCGACGAGGGGAAGGATTTGCAGGCGTTTTTCGTCACCGTCGATCCCGAGCGGGACACGC
CCGAGGTGATGAAGACCTATCTCAGCAATTTTTCCGATCGGGTGGTCGGCATCACCGGCGATCCTCAAAAAGTCGAGGAG
ATGGTGAAAGCGTATCGGATCTATTTTCGTAAGGTCGAGCTGGAAGGGGGCGGCTATACGATGGATCACACCGCCTCTGT
AATGCTCCTCGACAGCAGCGGCGATTTCTTCGGCACCATATCCTACGAAGAGAACCAGGAAACGGCTATCGCAAAGCTTC
GCCGGCTGATAAGGGAAGGCTGA

Upstream 100 bases:

>100_bases
TGGCCGATGCCTGAAAACACTTCGTTTCTTTTCAAACTTGCCGCTGCGGGCACATTGCTGGCGGGCCTGGGTGGGCTTGG
GCTCGCCATGTGGGTCGACA

Downstream 100 bases:

>100_bases
TCCGCCTCATTCTCATCTCCCCCAATGCCTCAGACACGCCTCTTTTTTCGCTCGAACGGCGCCCCCGCCAGGGAAGCATT
TTCCCGGCTGGAAGCGGCAT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MGQRFSFPSRKQASPGASKSNSEPGGYLMMRYILVGIILLTAGAFGAIAFNFYSGQNQAVAFGAPFELIDHEGQPITEKA
LQGRPTALFFGFTHCPDVCPTTLFEMQGWLDQLGDEGKDLQAFFVTVDPERDTPEVMKTYLSNFSDRVVGITGDPQKVEE
MVKAYRIYFRKVELEGGGYTMDHTASVMLLDSSGDFFGTISYEENQETAIAKLRRLIREG

Sequences:

>Translated_220_residues
MGQRFSFPSRKQASPGASKSNSEPGGYLMMRYILVGIILLTAGAFGAIAFNFYSGQNQAVAFGAPFELIDHEGQPITEKA
LQGRPTALFFGFTHCPDVCPTTLFEMQGWLDQLGDEGKDLQAFFVTVDPERDTPEVMKTYLSNFSDRVVGITGDPQKVEE
MVKAYRIYFRKVELEGGGYTMDHTASVMLLDSSGDFFGTISYEENQETAIAKLRRLIREG
>Mature_219_residues
GQRFSFPSRKQASPGASKSNSEPGGYLMMRYILVGIILLTAGAFGAIAFNFYSGQNQAVAFGAPFELIDHEGQPITEKAL
QGRPTALFFGFTHCPDVCPTTLFEMQGWLDQLGDEGKDLQAFFVTVDPERDTPEVMKTYLSNFSDRVVGITGDPQKVEEM
VKAYRIYFRKVELEGGGYTMDHTASVMLLDSSGDFFGTISYEENQETAIAKLRRLIREG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=226, Percent_Identity=31.4159292035398, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI281182727, Length=162, Percent_Identity=32.7160493827161, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI281182722, Length=162, Percent_Identity=32.7160493827161, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI281182716, Length=162, Percent_Identity=32.7160493827161, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI153791313, Length=162, Percent_Identity=32.7160493827161, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17531419, Length=140, Percent_Identity=31.4285714285714, Blast_Score=90, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6319498, Length=164, Percent_Identity=37.1951219512195, Blast_Score=133, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6319511, Length=161, Percent_Identity=36.0248447204969, Blast_Score=117, Evalue=1e-27,
Organism=Drosophila melanogaster, GI19920710, Length=229, Percent_Identity=28.82096069869, Blast_Score=109, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 24401; Mature: 24270

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQRFSFPSRKQASPGASKSNSEPGGYLMMRYILVGIILLTAGAFGAIAFNFYSGQNQAV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCEE
AFGAPFELIDHEGQPITEKALQGRPTALFFGFTHCPDVCPTTLFEMQGWLDQLGDEGKDL
EECCCHHHHCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCE
QAFFVTVDPERDTPEVMKTYLSNFSDRVVGITGDPQKVEEMVKAYRIYFRKVELEGGGYT
EEEEEEECCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEECCCCEE
MDHTASVMLLDSSGDFFGTISYEENQETAIAKLRRLIREG
ECCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
GQRFSFPSRKQASPGASKSNSEPGGYLMMRYILVGIILLTAGAFGAIAFNFYSGQNQAV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCEE
AFGAPFELIDHEGQPITEKALQGRPTALFFGFTHCPDVCPTTLFEMQGWLDQLGDEGKDL
EECCCHHHHCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCE
QAFFVTVDPERDTPEVMKTYLSNFSDRVVGITGDPQKVEEMVKAYRIYFRKVELEGGGYT
EEEEEEECCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEECCCCEE
MDHTASVMLLDSSGDFFGTISYEENQETAIAKLRRLIREG
ECCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]