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The map label for this gene is lppB [H]

Identifier: 110634151

GI number: 110634151

Start: 1930556

End: 1931794

Strand: Reverse

Name: lppB [H]

Synonym: Meso_1800

Alternate gene names: 110634151

Gene position: 1931794-1930556 (Counterclockwise)

Preceding gene: 110634152

Following gene: 110634148

Centisome position: 43.78

GC content: 65.86

Gene sequence:

>1239_bases
ATGCCAAAGTACAAGACATCGCTTGCGAGAGGTGCGGCGATTTTCTTGGTCGGATCTCTGGCGGCGGGTTGCAGCGTTGC
GAATCTGACTGACGGATTGACGACGAATTCCACCGCGCCGGTAGGGATGGCGCAAGCGAATCAGCCCTATCCCGGAGAGA
ACCGCATCGTCCGCCCGAAGGCGGACATCGGAGGAGGGGGCATATTGCAGCCGTCATCGGAAGTCTCGTCGCTTCCAGCC
CCTGCTGCAACCCCAGCCTACGGGGTTCCAGTTTATACCGCGCCGCGTTCCTCTTCGGTTTCCTCAGCTCCGCTCCCACC
TCCTGGAGCGGCCCAGTCCTCGGCAAGCCCGGTGACGGCAGTGCCCGTTGAGCAGCCGCGCCAGGTCGCCGCGGCGCCGC
AAGCTCCCCAGCCAAGCCGAACGCGAGCCAGCGAGCCGAGCGCCGGTGGCAGTTACAGGGTGGATTCAGGCGACACGCTT
TACGGGATCGCCCGCAAGACCGGCGTGAGCGTAAGCCAGTTGAAGGAAGCAAACGGCCTTTCGGACGGCGCGATCAGAAT
CGGCCAGAATCTGGTCATCCCTGGGAGCGGGGCCGCTGTCTCCGCCTCGGCTCCCGCACAGCAACCGCAGCCGGTGAGGA
CCGTCAGCGCGCCCAGCGCCAAACCGGCGCAGCCGGCCGCCCCGAAGCCGGCAGCCGTGGCCGCCGCGCCCCAGCCTGAG
CCGGCGGTGGTTGCAGCCGCGCCGAAGCCTGAAGCACAGGACGAGCCGAGGGTTACGGCATACACGCCGCCCACTGAATC
GAAAACCAAGGCCATCGAGGCGGTCGAACAGACGCAAGTTGCGGCATTGCCGCCAGAATCGACCGGCGTCGGCCGGCTGC
GCTGGCCCGCACAGGGCCGGGTCATCGCCGGTTTTGGCAGCAGCGGCGGCAAGAAAAGCGATGGCATCGACATCGCTGTT
CCCGAAGGCACGGCGGTGCACGCGGCGGAAAACGGTGTCGTCATTTATGCCGGCGACGGTCTGAAGGGTTTCGGCAACAC
CGTGCTTGTTCGCCATGAGGACGGCCTCGTCACCGTCTATGGCCACGCCTCGGAACTGAAGGTCAAGCGAGGCGACCAGG
TTCGCCGCGGCCAGGAGATCGCACGCTCCGGCATGACGGGTGACGCTGATCGCCCCAAGCTGCACTTCGAGGTGCGCAAG
GGCACCAGCCCTGTCGATCCGATGACTTATTTGAGATGA

Upstream 100 bases:

>100_bases
CGTGTGAAATTTTCGAAGCTTAACGGCCCGGTAAGATTAACGCGCTTTAATCGGACTGGGTCAACGGGATTGCGCGGATA
GCCTTATGCCTAAGGGAATT

Downstream 100 bases:

>100_bases
GAACAGTGTCGGCCAAACCTGCGTCCCTCAAAGGACGCGGGTAGCGCCGCGCTCAATCCTTCAAGGTCCGCCCCAGGCGG
CCTGCAATATCCTGAATGAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MPKYKTSLARGAAIFLVGSLAAGCSVANLTDGLTTNSTAPVGMAQANQPYPGENRIVRPKADIGGGGILQPSSEVSSLPA
PAATPAYGVPVYTAPRSSSVSSAPLPPPGAAQSSASPVTAVPVEQPRQVAAAPQAPQPSRTRASEPSAGGSYRVDSGDTL
YGIARKTGVSVSQLKEANGLSDGAIRIGQNLVIPGSGAAVSASAPAQQPQPVRTVSAPSAKPAQPAAPKPAAVAAAPQPE
PAVVAAAPKPEAQDEPRVTAYTPPTESKTKAIEAVEQTQVAALPPESTGVGRLRWPAQGRVIAGFGSSGGKKSDGIDIAV
PEGTAVHAAENGVVIYAGDGLKGFGNTVLVRHEDGLVTVYGHASELKVKRGDQVRRGQEIARSGMTGDADRPKLHFEVRK
GTSPVDPMTYLR

Sequences:

>Translated_412_residues
MPKYKTSLARGAAIFLVGSLAAGCSVANLTDGLTTNSTAPVGMAQANQPYPGENRIVRPKADIGGGGILQPSSEVSSLPA
PAATPAYGVPVYTAPRSSSVSSAPLPPPGAAQSSASPVTAVPVEQPRQVAAAPQAPQPSRTRASEPSAGGSYRVDSGDTL
YGIARKTGVSVSQLKEANGLSDGAIRIGQNLVIPGSGAAVSASAPAQQPQPVRTVSAPSAKPAQPAAPKPAAVAAAPQPE
PAVVAAAPKPEAQDEPRVTAYTPPTESKTKAIEAVEQTQVAALPPESTGVGRLRWPAQGRVIAGFGSSGGKKSDGIDIAV
PEGTAVHAAENGVVIYAGDGLKGFGNTVLVRHEDGLVTVYGHASELKVKRGDQVRRGQEIARSGMTGDADRPKLHFEVRK
GTSPVDPMTYLR
>Mature_411_residues
PKYKTSLARGAAIFLVGSLAAGCSVANLTDGLTTNSTAPVGMAQANQPYPGENRIVRPKADIGGGGILQPSSEVSSLPAP
AATPAYGVPVYTAPRSSSVSSAPLPPPGAAQSSASPVTAVPVEQPRQVAAAPQAPQPSRTRASEPSAGGSYRVDSGDTLY
GIARKTGVSVSQLKEANGLSDGAIRIGQNLVIPGSGAAVSASAPAQQPQPVRTVSAPSAKPAQPAAPKPAAVAAAPQPEP
AVVAAAPKPEAQDEPRVTAYTPPTESKTKAIEAVEQTQVAALPPESTGVGRLRWPAQGRVIAGFGSSGGKKSDGIDIAVP
EGTAVHAAENGVVIYAGDGLKGFGNTVLVRHEDGLVTVYGHASELKVKRGDQVRRGQEIARSGMTGDADRPKLHFEVRKG
TSPVDPMTYLR

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=274, Percent_Identity=31.3868613138686, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082174, Length=266, Percent_Identity=31.203007518797, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=38.655462184874, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 41743; Mature: 41612

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKYKTSLARGAAIFLVGSLAAGCSVANLTDGLTTNSTAPVGMAQANQPYPGENRIVRPK
CCCHHHHHHCCEEEEEEEHHHHCCEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
ADIGGGGILQPSSEVSSLPAPAATPAYGVPVYTAPRSSSVSSAPLPPPGAAQSSASPVTA
CCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
VPVEQPRQVAAAPQAPQPSRTRASEPSAGGSYRVDSGDTLYGIARKTGVSVSQLKEANGL
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEHHHCCCCHHHHHHHCCC
SDGAIRIGQNLVIPGSGAAVSASAPAQQPQPVRTVSAPSAKPAQPAAPKPAAVAAAPQPE
CCCEEEECCEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCC
PAVVAAAPKPEAQDEPRVTAYTPPTESKTKAIEAVEQTQVAALPPESTGVGRLRWPAQGR
CEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHEEEECCCCCCCCCEEECCCCCC
VIAGFGSSGGKKSDGIDIAVPEGTAVHAAENGVVIYAGDGLKGFGNTVLVRHEDGLVTVY
EEEEECCCCCCCCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCCEEEEE
GHASELKVKRGDQVRRGQEIARSGMTGDADRPKLHFEVRKGTSPVDPMTYLR
ECCCEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHCC
>Mature Secondary Structure 
PKYKTSLARGAAIFLVGSLAAGCSVANLTDGLTTNSTAPVGMAQANQPYPGENRIVRPK
CCHHHHHHCCEEEEEEEHHHHCCEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
ADIGGGGILQPSSEVSSLPAPAATPAYGVPVYTAPRSSSVSSAPLPPPGAAQSSASPVTA
CCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
VPVEQPRQVAAAPQAPQPSRTRASEPSAGGSYRVDSGDTLYGIARKTGVSVSQLKEANGL
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEHHHCCCCHHHHHHHCCC
SDGAIRIGQNLVIPGSGAAVSASAPAQQPQPVRTVSAPSAKPAQPAAPKPAAVAAAPQPE
CCCEEEECCEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCC
PAVVAAAPKPEAQDEPRVTAYTPPTESKTKAIEAVEQTQVAALPPESTGVGRLRWPAQGR
CEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHEEEECCCCCCCCCEEECCCCCC
VIAGFGSSGGKKSDGIDIAVPEGTAVHAAENGVVIYAGDGLKGFGNTVLVRHEDGLVTVY
EEEEECCCCCCCCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCCEEEEE
GHASELKVKRGDQVRRGQEIARSGMTGDADRPKLHFEVRKGTSPVDPMTYLR
ECCCEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]