| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is secD [H]
Identifier: 110634147
GI number: 110634147
Start: 1921428
End: 1923998
Strand: Reverse
Name: secD [H]
Synonym: Meso_1796
Alternate gene names: 110634147
Gene position: 1923998-1921428 (Counterclockwise)
Preceding gene: 110634148
Following gene: 110634146
Centisome position: 43.6
GC content: 61.69
Gene sequence:
>2571_bases ATGCTACATTTCTCGCGCTGGCAGACATTCTTCATCTGGCTCGTGGTGGCTCTCGGGCTGGCATATGCAGCTCCCAATGT GCTTCCGCAGTCATGGTTGAGCTCGCTGCCGAGCTGGGCTCCCACGCGCCCGATGACCCTCGGGCTGGATCTGCAGGGCG GCTCGCACATCCTTCTGCAGATCAATCGCGACCAGCTCATCAACGAGCGTTTGACAAGCACGCGAGATGAAGTGCGGCGT GTGCTGCGCGACAGCCGTATCGGCTACACCGGCCTTTCTTCATCCGGCCGTTTCGTACAAGTGCGCATTCGCGACGCAGG CGAGATCGAGGCTGCGAAGCAAGCGCTTGGAGAGTTGCTGCAACCGGTGACGGGCGGGCTGCTTGGCACCAGTTCCATTC AGGAACTGGAGATGGCTGAGCCGGAGCCCGGCCTGTTGCGGCTCACCCTTACCGACGATGGAATTCAGTATCGTCTTTCC GCCGCGCTCACGCAGTCCATCGAGGTCGTGAGCCGCCGCGTGAACGAGCTTGGCACGACTGAGCCCGTCATCCAGCGCCA GGGGGACGACCGAATCCTGGTCCAGGTTCCGGGTCTCCAGGACCCTCAGCGCCTGAAAGATATCCTGGGCACAACGGCCA AGCTTACTTTCCAGATGGTCGACCAGTCCGTGCCGGTGCAGGAGGCGATCCAGGGCCGCCCGCCCGCCGGCACGACGGTG ATGTACACCCGCGACAACCCGCCCGTTCCCTTTCTCATCGAGGACCGGGTGATCGTTTCCGGCGAGAATCTCGTCGATGC CCAGACGTCCTTCGACCAACTCACGAATGAGCCGGTCGTTACGTTCCGCTTCGATACCAGGGGCGCGACGCGGTTCGGCC AGGCCACCCAGGAGAATGTCGGCAGGCTTTTCGCGATCGTTCTTGACGGGCATGTGATTTCGGCGCCGCAGATCCGCGAG CCCATCCTCGGCGGCACGGGGCAGATCGCGGGCAGCTTCACCGTCCAGAGCGCGAACGACCTTGCGGTGCTTCTGCGCGC CGGCGCCCTGCCGGCGGACCTGACCATTGTCGAGGAGCGGACCGTTGGTCCTGGACTTGGCCAGGATTCCATCGACGCGG GCAAGATGGCGGCGATCATCGGCTCGATTCTCGTCGTCGTCTTTATGTTCGCCGCCTATGGCTTTCTTGGCCTCATCGCG AATGTGGCGCTGGTCGCCAATATCGCCCTTATTGTTGCCGTGCTCTCCGTGCTTGGCGCGACGCTGACACTGCCGGGCAT TGCCGGCATCGTCCTCACGATCGGCATGGCTGTCGATTCCAACGTGCTGATTTACGAGCGCATACGCGAAGAGCGACGAG CCGGCCGCACCGTGATCCAAGCCTTCGATTCAGGTTTCCGGAAGGCGCTTGCGACGATTATCGATTCCAACATCACGACG CTGATTGCTGCCGTGGTCCTGTTCTTCCTTGGCTCCGGTCCCGTGCGCGGGTTCGCGGTGACGCTCGCCATCGGCATCGT GACGACGGTCTTCACCGCCTTCACGCTGACCCGTTGGCTGGTTGCTGTTTGGCTGCGCCGCAGCCGCCCGAAGGAACTGC CGCGCGGCTATATCCGCCTTGTGCCGGAAGTGACGCGCATCCCCTTCATGAAGGTGCGACTGCAGGCTTTCGCCTTCTCA TTTATGCTCTGTATCGCGTCAGTAGCGCTGCTTTTCATCGTCAAGCCGAATTTCGGCATCGACTTTACCGGCGGCACGCT GATTGAGGTCCGGGCCAAGTCCGGCGAAGCCGATATCAGCGATATAAGACAGCGGCTTTCAGCGGCGGGGATCGGCGATG CGCAGGTGCAAGGTTTCGGAACCGAAACCGATGCGCTTATCCGGATCGGCGCCGCGCCAGATTCAGGCGAGGAATCCGGC AATATCCTCGTCCGCAATGCCCAGCAGGCGGTTTCGTCGGACTACGATATCCGGCGAACGGAGGTGGTGGGCCCAACCGT CTCAGGCGAGCTGGCGTGGGCGGCGGTCATAGGTGTCCTCGCGGCCATGGCCGGAATTTTGATCTATGTCTGGATTCGTT TCGAGTGGCAGTTCGCACTCGGTGCGATCATTGCCACCGCAAACGACATCATCCTGACGCTCGGCTTCATCACCATCACG CAGCTCCAGTTCGATCTTTCGACCGTGGCGGCGATCCTCACGATCGTCGGTTATTCGCTGAACGATACCGTCGTCATCTA TGACCGTGTCCGCGAGAATCTCAGGCGCTTCAAGAAGATGCCTCTGGGGCAATTGCTGGATTTATCAGACAACGAGATGC TGTCACGCACGGCGATGACCTCGGTCACGACGTTCCTGGCGCTTCTTGCCCTGTTTATTTTCGGCGGAGAGGTGATCCGC TCCTTCGTGGCTTCGATGCTTTTCGGTGTGTTTATCGGCACCTTCTCCTCAATCTTCGTCGCCGCGCCGATCCTCATCTT CTTCAAGCTGCGGCCGGTGAGCGGCCCGGTGGTGGACACGGAACCGGCCGCCGCCGACACCGAGGCGGCCCCACACGTTC CGTCACGCTGA
Upstream 100 bases:
>100_bases GTGAACCGACGGCGACCGAAAAGGCCGTTAAATAGCCCGCTTCAAGCGGGATTCTGGGGCTGGCCTGCATGAAAGGCCGG CCTGAACGACAAGAGACAAC
Downstream 100 bases:
>100_bases TGGCGGGGGGAATCGAGATACGCGCGGCCCACTTCCCTGGCCGCGCGCCGATAGATGCTTACGGCAATGGGGGCTTCCGC TTCGCGGATATGTCCCATCG
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 856
Protein sequence:
>856_residues MLHFSRWQTFFIWLVVALGLAYAAPNVLPQSWLSSLPSWAPTRPMTLGLDLQGGSHILLQINRDQLINERLTSTRDEVRR VLRDSRIGYTGLSSSGRFVQVRIRDAGEIEAAKQALGELLQPVTGGLLGTSSIQELEMAEPEPGLLRLTLTDDGIQYRLS AALTQSIEVVSRRVNELGTTEPVIQRQGDDRILVQVPGLQDPQRLKDILGTTAKLTFQMVDQSVPVQEAIQGRPPAGTTV MYTRDNPPVPFLIEDRVIVSGENLVDAQTSFDQLTNEPVVTFRFDTRGATRFGQATQENVGRLFAIVLDGHVISAPQIRE PILGGTGQIAGSFTVQSANDLAVLLRAGALPADLTIVEERTVGPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFLGLIA NVALVANIALIVAVLSVLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRTVIQAFDSGFRKALATIIDSNITT LIAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPKELPRGYIRLVPEVTRIPFMKVRLQAFAFS FMLCIASVALLFIVKPNFGIDFTGGTLIEVRAKSGEADISDIRQRLSAAGIGDAQVQGFGTETDALIRIGAAPDSGEESG NILVRNAQQAVSSDYDIRRTEVVGPTVSGELAWAAVIGVLAAMAGILIYVWIRFEWQFALGAIIATANDIILTLGFITIT QLQFDLSTVAAILTIVGYSLNDTVVIYDRVRENLRRFKKMPLGQLLDLSDNEMLSRTAMTSVTTFLALLALFIFGGEVIR SFVASMLFGVFIGTFSSIFVAAPILIFFKLRPVSGPVVDTEPAAADTEAAPHVPSR
Sequences:
>Translated_856_residues MLHFSRWQTFFIWLVVALGLAYAAPNVLPQSWLSSLPSWAPTRPMTLGLDLQGGSHILLQINRDQLINERLTSTRDEVRR VLRDSRIGYTGLSSSGRFVQVRIRDAGEIEAAKQALGELLQPVTGGLLGTSSIQELEMAEPEPGLLRLTLTDDGIQYRLS AALTQSIEVVSRRVNELGTTEPVIQRQGDDRILVQVPGLQDPQRLKDILGTTAKLTFQMVDQSVPVQEAIQGRPPAGTTV MYTRDNPPVPFLIEDRVIVSGENLVDAQTSFDQLTNEPVVTFRFDTRGATRFGQATQENVGRLFAIVLDGHVISAPQIRE PILGGTGQIAGSFTVQSANDLAVLLRAGALPADLTIVEERTVGPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFLGLIA NVALVANIALIVAVLSVLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRTVIQAFDSGFRKALATIIDSNITT LIAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPKELPRGYIRLVPEVTRIPFMKVRLQAFAFS FMLCIASVALLFIVKPNFGIDFTGGTLIEVRAKSGEADISDIRQRLSAAGIGDAQVQGFGTETDALIRIGAAPDSGEESG NILVRNAQQAVSSDYDIRRTEVVGPTVSGELAWAAVIGVLAAMAGILIYVWIRFEWQFALGAIIATANDIILTLGFITIT QLQFDLSTVAAILTIVGYSLNDTVVIYDRVRENLRRFKKMPLGQLLDLSDNEMLSRTAMTSVTTFLALLALFIFGGEVIR SFVASMLFGVFIGTFSSIFVAAPILIFFKLRPVSGPVVDTEPAAADTEAAPHVPSR >Mature_856_residues MLHFSRWQTFFIWLVVALGLAYAAPNVLPQSWLSSLPSWAPTRPMTLGLDLQGGSHILLQINRDQLINERLTSTRDEVRR VLRDSRIGYTGLSSSGRFVQVRIRDAGEIEAAKQALGELLQPVTGGLLGTSSIQELEMAEPEPGLLRLTLTDDGIQYRLS AALTQSIEVVSRRVNELGTTEPVIQRQGDDRILVQVPGLQDPQRLKDILGTTAKLTFQMVDQSVPVQEAIQGRPPAGTTV MYTRDNPPVPFLIEDRVIVSGENLVDAQTSFDQLTNEPVVTFRFDTRGATRFGQATQENVGRLFAIVLDGHVISAPQIRE PILGGTGQIAGSFTVQSANDLAVLLRAGALPADLTIVEERTVGPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFLGLIA NVALVANIALIVAVLSVLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRTVIQAFDSGFRKALATIIDSNITT LIAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPKELPRGYIRLVPEVTRIPFMKVRLQAFAFS FMLCIASVALLFIVKPNFGIDFTGGTLIEVRAKSGEADISDIRQRLSAAGIGDAQVQGFGTETDALIRIGAAPDSGEESG NILVRNAQQAVSSDYDIRRTEVVGPTVSGELAWAAVIGVLAAMAGILIYVWIRFEWQFALGAIIATANDIILTLGFITIT QLQFDLSTVAAILTIVGYSLNDTVVIYDRVRENLRRFKKMPLGQLLDLSDNEMLSRTAMTSVTTFLALLALFIFGGEVIR SFVASMLFGVFIGTFSSIFVAAPILIFFKLRPVSGPVVDTEPAAADTEAAPHVPSR
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=540, Percent_Identity=38.5185185185185, Blast_Score=333, Evalue=2e-92, Organism=Escherichia coli, GI1786610, Length=302, Percent_Identity=36.0927152317881, Blast_Score=208, Evalue=1e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 92549; Mature: 92549
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHFSRWQTFFIWLVVALGLAYAAPNVLPQSWLSSLPSWAPTRPMTLGLDLQGGSHILLQ CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEE INRDQLINERLTSTRDEVRRVLRDSRIGYTGLSSSGRFVQVRIRDAGEIEAAKQALGELL ECHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH QPVTGGLLGTSSIQELEMAEPEPGLLRLTLTDDGIQYRLSAALTQSIEVVSRRVNELGTT HHHHCCCCCCCCHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC EPVIQRQGDDRILVQVPGLQDPQRLKDILGTTAKLTFQMVDQSVPVQEAIQGRPPAGTTV CHHHHCCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHCCCCCCCCEE MYTRDNPPVPFLIEDRVIVSGENLVDAQTSFDQLTNEPVVTFRFDTRGATRFGQATQENV EEECCCCCCCEEECCEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHCCHHHHHH GRLFAIVLDGHVISAPQIREPILGGTGQIAGSFTVQSANDLAVLLRAGALPADLTIVEER HHEEEEEECCCEECCCCHHCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCEEEEECC TVGPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFLGLIANVALVANIALIVAVLSVLGA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRTVIQAFDSGFRKALATIIDSNITT HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LIAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPKELPRGYIRL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH VPEVTRIPFMKVRLQAFAFSFMLCIASVALLFIVKPNFGIDFTGGTLIEVRAKSGEADIS CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCEEEEEEECCCCCCHH DIRQRLSAAGIGDAQVQGFGTETDALIRIGAAPDSGEESGNILVRNAQQAVSSDYDIRRT HHHHHHHHCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHCCCCCCCEE EVVGPTVSGELAWAAVIGVLAAMAGILIYVWIRFEWQFALGAIIATANDIILTLGFITIT EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCHHHHHHHHHHHH QLQFDLSTVAAILTIVGYSLNDTVVIYDRVRENLRRFKKMPLGQLLDLSDNEMLSRTAMT HHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHH SVTTFLALLALFIFGGEVIRSFVASMLFGVFIGTFSSIFVAAPILIFFKLRPVSGPVVDT HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC EPAAADTEAAPHVPSR CCCCCCCCCCCCCCCC >Mature Secondary Structure MLHFSRWQTFFIWLVVALGLAYAAPNVLPQSWLSSLPSWAPTRPMTLGLDLQGGSHILLQ CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEE INRDQLINERLTSTRDEVRRVLRDSRIGYTGLSSSGRFVQVRIRDAGEIEAAKQALGELL ECHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH QPVTGGLLGTSSIQELEMAEPEPGLLRLTLTDDGIQYRLSAALTQSIEVVSRRVNELGTT HHHHCCCCCCCCHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC EPVIQRQGDDRILVQVPGLQDPQRLKDILGTTAKLTFQMVDQSVPVQEAIQGRPPAGTTV CHHHHCCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHCCCCCCCCEE MYTRDNPPVPFLIEDRVIVSGENLVDAQTSFDQLTNEPVVTFRFDTRGATRFGQATQENV EEECCCCCCCEEECCEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHCCHHHHHH GRLFAIVLDGHVISAPQIREPILGGTGQIAGSFTVQSANDLAVLLRAGALPADLTIVEER HHEEEEEECCCEECCCCHHCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCEEEEECC TVGPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFLGLIANVALVANIALIVAVLSVLGA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRTVIQAFDSGFRKALATIIDSNITT HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LIAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPKELPRGYIRL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH VPEVTRIPFMKVRLQAFAFSFMLCIASVALLFIVKPNFGIDFTGGTLIEVRAKSGEADIS CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCEEEEEEECCCCCCHH DIRQRLSAAGIGDAQVQGFGTETDALIRIGAAPDSGEESGNILVRNAQQAVSSDYDIRRT HHHHHHHHCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHCCCCCCCEE EVVGPTVSGELAWAAVIGVLAAMAGILIYVWIRFEWQFALGAIIATANDIILTLGFITIT EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCHHHHHHHHHHHH QLQFDLSTVAAILTIVGYSLNDTVVIYDRVRENLRRFKKMPLGQLLDLSDNEMLSRTAMT HHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHH SVTTFLALLALFIFGGEVIRSFVASMLFGVFIGTFSSIFVAAPILIFFKLRPVSGPVVDT HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC EPAAADTEAAPHVPSR CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9826342 [H]