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The map label for this gene is sufD [C]

Identifier: 110634130

GI number: 110634130

Start: 1900015

End: 1901283

Strand: Reverse

Name: sufD [C]

Synonym: Meso_1779

Alternate gene names: 110634130

Gene position: 1901283-1900015 (Counterclockwise)

Preceding gene: 110634131

Following gene: 110634129

Centisome position: 43.09

GC content: 64.14

Gene sequence:

>1269_bases
ATGATGAATTTGCAGGTTCAGGTAAGACATACCGCCGCCGAGGAGGCGCTGCTTTCGGCCTATTCGGAGCGCGCCGCCAG
CCTTCCCGGAGACGAGCGGACCGCAGAGAAGCGCGAGCAGGCGGTTGAGATCCTCAAAAAAGGCCTGCCCAATCGTCGGG
TGGAAGCCTGGCACTATACGGATCTGCGCCGGCTCCTTTCCACGGTGCCGGCATTTGAGGCGGCTACCCATTTGGAGCAG
CGCGAGCCCCTTCTGCCGGGCTCGGTTGTCCTGCCGGTTCTGAACGGCATTGCCAAGCCGATGCAAGAGCTGAGCGACGT
GTCGGTTGCGACGGTGACGAATGAGCTCACCGACGGCAGCCTCGCGGCGCGGCTGGCGCTCGCGGGGACCGACGACGCCA
TAGGCGCGATCAACGCCGCCTTCGTGACGGATGGTTTCGCGCTCGACATCCCGGCCGATGCCGCGCTGGGGCATCCTATC
GAGCTCCAGAACGTTCAGGCAGGCGGCCAGGTGCACACGCGTTTCGCAGTGCGCGCGGGCGAGCGCGCCAAGGCGACGAT
CGTGGAGCGCCAGCTTGGCGATGGCGCGGCGCTGGTCTCCTCCGTAAGTCATCTGGACGTGGGCGATGGCGCCGAGGTTG
TTTACCTGATCATTCAGGAGCAGCCAGACGATGCCCGCCATCTCGGCCAGATTTATGTGAAGATCGGCAAGGACGCGAAG
CTGACTTTGTTCGTGATGAACACCGGCGGCAAGCTGGTGCGCCAGGAGCTGCGGATTATCGCGGAAGGCGAGGGCTCGGA
GTTCCGCCTGCGCGGCGTCAATCTGCTTGCGGGCGACACGCATTGCGACGTGACAATGATACTCGACCACGCCGCGCCGC
ACACGGTCTCCACGGAAACCATCCGCAATGTGGTGACGGGTAAGGCGGAAGGCGCGTTCCAGGGGCAGATTCGCGTGGCG
CGCGACGCGCAGAAAACCGACGCCAAAATGGCCTGCAATACGCTGCTCCTGTCGGACGAGGGCGGATTTTCCTCCAAGCC
CGAGCTTGAGATTTTCGCCGATGACGTGGCCTGCGGCCACGGCGCGACTGTGACGGAAATCGAGCCTGCGCATCTCTTCT
ACCTCATGGCGCGCGGCATCGACGAGAAAACGGCGCGCGGGCTTCTGGTCAAGGCTTTCGTGGCCGAGGTGATCGAGGAG
CTGGAAGACGAGCAGGTCGTCGAAGTGCTCGAAGGCAAGCTCGACGCGTGGTTTGCCGCGCACGGGTGA

Upstream 100 bases:

>100_bases
ATAAGGGCCAGGTTGTGAAGTCCGGTGAAAAGGAATTGGCGCAGGAGCTGGAGAAGAACGGCTATGCCGGGCTGATCGGC
GAGGCGGCCTGAGGGCAGAG

Downstream 100 bases:

>100_bases
GGCAGACACTCCAACCGCCTTGTTTCGCGCGGCACCTCTTTCCCCTTGAGGGAATGGAAATCGCGGTAGCGAAGCCGAAC
GGGCGAGGGAGCGCTTGCAG

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MMNLQVQVRHTAAEEALLSAYSERAASLPGDERTAEKREQAVEILKKGLPNRRVEAWHYTDLRRLLSTVPAFEAATHLEQ
REPLLPGSVVLPVLNGIAKPMQELSDVSVATVTNELTDGSLAARLALAGTDDAIGAINAAFVTDGFALDIPADAALGHPI
ELQNVQAGGQVHTRFAVRAGERAKATIVERQLGDGAALVSSVSHLDVGDGAEVVYLIIQEQPDDARHLGQIYVKIGKDAK
LTLFVMNTGGKLVRQELRIIAEGEGSEFRLRGVNLLAGDTHCDVTMILDHAAPHTVSTETIRNVVTGKAEGAFQGQIRVA
RDAQKTDAKMACNTLLLSDEGGFSSKPELEIFADDVACGHGATVTEIEPAHLFYLMARGIDEKTARGLLVKAFVAEVIEE
LEDEQVVEVLEGKLDAWFAAHG

Sequences:

>Translated_422_residues
MMNLQVQVRHTAAEEALLSAYSERAASLPGDERTAEKREQAVEILKKGLPNRRVEAWHYTDLRRLLSTVPAFEAATHLEQ
REPLLPGSVVLPVLNGIAKPMQELSDVSVATVTNELTDGSLAARLALAGTDDAIGAINAAFVTDGFALDIPADAALGHPI
ELQNVQAGGQVHTRFAVRAGERAKATIVERQLGDGAALVSSVSHLDVGDGAEVVYLIIQEQPDDARHLGQIYVKIGKDAK
LTLFVMNTGGKLVRQELRIIAEGEGSEFRLRGVNLLAGDTHCDVTMILDHAAPHTVSTETIRNVVTGKAEGAFQGQIRVA
RDAQKTDAKMACNTLLLSDEGGFSSKPELEIFADDVACGHGATVTEIEPAHLFYLMARGIDEKTARGLLVKAFVAEVIEE
LEDEQVVEVLEGKLDAWFAAHG
>Mature_422_residues
MMNLQVQVRHTAAEEALLSAYSERAASLPGDERTAEKREQAVEILKKGLPNRRVEAWHYTDLRRLLSTVPAFEAATHLEQ
REPLLPGSVVLPVLNGIAKPMQELSDVSVATVTNELTDGSLAARLALAGTDDAIGAINAAFVTDGFALDIPADAALGHPI
ELQNVQAGGQVHTRFAVRAGERAKATIVERQLGDGAALVSSVSHLDVGDGAEVVYLIIQEQPDDARHLGQIYVKIGKDAK
LTLFVMNTGGKLVRQELRIIAEGEGSEFRLRGVNLLAGDTHCDVTMILDHAAPHTVSTETIRNVVTGKAEGAFQGQIRVA
RDAQKTDAKMACNTLLLSDEGGFSSKPELEIFADDVACGHGATVTEIEPAHLFYLMARGIDEKTARGLLVKAFVAEVIEE
LEDEQVVEVLEGKLDAWFAAHG

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=394, Percent_Identity=28.1725888324873, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI87081955, Length=297, Percent_Identity=24.2424242424242, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45339; Mature: 45339

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNLQVQVRHTAAEEALLSAYSERAASLPGDERTAEKREQAVEILKKGLPNRRVEAWHYT
CCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEHHH
DLRRLLSTVPAFEAATHLEQREPLLPGSVVLPVLNGIAKPMQELSDVSVATVTNELTDGS
HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH
LAARLALAGTDDAIGAINAAFVTDGFALDIPADAALGHPIELQNVQAGGQVHTRFAVRAG
HHEEEEECCCCCHHHHCCHHEEECCEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEECC
ERAKATIVERQLGDGAALVSSVSHLDVGDGAEVVYLIIQEQPDDARHLGQIYVKIGKDAK
CCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHEEEEEEECCCCE
LTLFVMNTGGKLVRQELRIIAEGEGSEFRLRGVNLLAGDTHCDVTMILDHAAPHTVSTET
EEEEEECCCCHHHHHHHHEEECCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCHHH
IRNVVTGKAEGAFQGQIRVARDAQKTDAKMACNTLLLSDEGGFSSKPELEIFADDVACGH
HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEECCCCCCC
GATVTEIEPAHLFYLMARGIDEKTARGLLVKAFVAEVIEELEDEQVVEVLEGKLDAWFAA
CCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHEEEC
HG
CC
>Mature Secondary Structure
MMNLQVQVRHTAAEEALLSAYSERAASLPGDERTAEKREQAVEILKKGLPNRRVEAWHYT
CCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEHHH
DLRRLLSTVPAFEAATHLEQREPLLPGSVVLPVLNGIAKPMQELSDVSVATVTNELTDGS
HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH
LAARLALAGTDDAIGAINAAFVTDGFALDIPADAALGHPIELQNVQAGGQVHTRFAVRAG
HHEEEEECCCCCHHHHCCHHEEECCEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEECC
ERAKATIVERQLGDGAALVSSVSHLDVGDGAEVVYLIIQEQPDDARHLGQIYVKIGKDAK
CCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHEEEEEEECCCCE
LTLFVMNTGGKLVRQELRIIAEGEGSEFRLRGVNLLAGDTHCDVTMILDHAAPHTVSTET
EEEEEECCCCHHHHHHHHEEECCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCHHH
IRNVVTGKAEGAFQGQIRVARDAQKTDAKMACNTLLLSDEGGFSSKPELEIFADDVACGH
HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEECCCCCCC
GATVTEIEPAHLFYLMARGIDEKTARGLLVKAFVAEVIEELEDEQVVEVLEGKLDAWFAA
CCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHEEEC
HG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]