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The map label for this gene is ssb [H]

Identifier: 110633750

GI number: 110633750

Start: 1492941

End: 1493423

Strand: Direct

Name: ssb [H]

Synonym: Meso_1397

Alternate gene names: 110633750

Gene position: 1492941-1493423 (Clockwise)

Preceding gene: 110633746

Following gene: 110633751

Centisome position: 33.83

GC content: 61.9

Gene sequence:

>483_bases
ATGGCGGGTAGCGTCAATAAGGTGATCTTGGTGGGCAATCTGGGGGCCGACCCCGAGATCCGGCGCCTCAATTCGGGCGA
TCCGGTTGTCAATCTTCGGATCGCAACGTCGGAGTCCTGGCGCGACCGCAACTCGGGCGAGCGTCGCGACCGCACCGAGT
GGCACAATGTCGTAATCTTCAACGACAATCTGGCCAAGGTGGCGGAGCAGTATCTGAAGAAGGGCATGAAGGTCTATATG
GAGGGTCAGTTGCAGACCCGGAAATGGACCGATCAAAGCGGCCAGGAGCGTTATACGACCGAGGTCGTCCTGCAAAAATT
CCGTGGGGAACTGCAGATGCTGGATTCCCGTGGCCAGGGCGGCGGCGAGGGCCAGGTAAGCTACGGTGGTGGCCGGGGCT
CCGATTTCGGCCGGTCCGGTCCGGCCGAAAGCGGCGGAGGAGGCGGCCACTCGCGAGACCTGGACGACGAAATACCGTTC
TGA

Upstream 100 bases:

>100_bases
CGGGTCGGGTAAGATCGCGGCACTGGATCGGAGCGGCCGCTTCTCCTGCTGGGGAAAGCACTCTTCGGGACGCGAAATTT
AGGACGAGTGGAGTAAAGTC

Downstream 100 bases:

>100_bases
TTTCGTCCATGGTCCGCATGCGGGGAGCAAGGCCGTTGTTCTACCATGGGTAACGACAGGTCTCACCCGGTGGCTGCATT
CCGATGCGGCGTTTTCAGCA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAGSVNKVILVGNLGADPEIRRLNSGDPVVNLRIATSESWRDRNSGERRDRTEWHNVVIFNDNLAKVAEQYLKKGMKVYM
EGQLQTRKWTDQSGQERYTTEVVLQKFRGELQMLDSRGQGGGEGQVSYGGGRGSDFGRSGPAESGGGGGHSRDLDDEIPF

Sequences:

>Translated_160_residues
MAGSVNKVILVGNLGADPEIRRLNSGDPVVNLRIATSESWRDRNSGERRDRTEWHNVVIFNDNLAKVAEQYLKKGMKVYM
EGQLQTRKWTDQSGQERYTTEVVLQKFRGELQMLDSRGQGGGEGQVSYGGGRGSDFGRSGPAESGGGGGHSRDLDDEIPF
>Mature_159_residues
AGSVNKVILVGNLGADPEIRRLNSGDPVVNLRIATSESWRDRNSGERRDRTEWHNVVIFNDNLAKVAEQYLKKGMKVYME
GQLQTRKWTDQSGQERYTTEVVLQKFRGELQMLDSRGQGGGEGQVSYGGGRGSDFGRSGPAESGGGGGHSRDLDDEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=105, Percent_Identity=34.2857142857143, Blast_Score=74, Evalue=8e-14,
Organism=Escherichia coli, GI1790494, Length=178, Percent_Identity=49.438202247191, Blast_Score=150, Evalue=5e-38,
Organism=Drosophila melanogaster, GI85725234, Length=100, Percent_Identity=36, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24647376, Length=100, Percent_Identity=36, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 17632; Mature: 17501

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSVNKVILVGNLGADPEIRRLNSGDPVVNLRIATSESWRDRNSGERRDRTEWHNVVIF
CCCCCCEEEEEECCCCCCHHEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
NDNLAKVAEQYLKKGMKVYMEGQLQTRKWTDQSGQERYTTEVVLQKFRGELQMLDSRGQG
CCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GGEGQVSYGGGRGSDFGRSGPAESGGGGGHSRDLDDEIPF
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGSVNKVILVGNLGADPEIRRLNSGDPVVNLRIATSESWRDRNSGERRDRTEWHNVVIF
CCCCCEEEEEECCCCCCHHEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
NDNLAKVAEQYLKKGMKVYMEGQLQTRKWTDQSGQERYTTEVVLQKFRGELQMLDSRGQG
CCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GGEGQVSYGGGRGSDFGRSGPAESGGGGGHSRDLDDEIPF
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]