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The map label for this gene is hofQ [C]

Identifier: 110632479

GI number: 110632479

Start: 143399

End: 144820

Strand: Direct

Name: hofQ [C]

Synonym: Meso_0117

Alternate gene names: 110632479

Gene position: 143399-144820 (Clockwise)

Preceding gene: 110632478

Following gene: 110632480

Centisome position: 3.25

GC content: 55.56

Gene sequence:

>1422_bases
ATGTCGCAGATGAACTGCTCGACCTTAGCGCATAAATCCGAGCACCGGCTTCGGTTATCGGAAGCCATGATGTCTAGACT
CAATGATCTGCAGCATCCTCCGTGCGTTCTGATAGACGCACGGCACTGTAGCGCGCGCGCATTTTTGTACACTTTCCGGT
CGGGGGCGCTCGTCTTTTTTACAAGACTGCTTTCATTGCTGGCGTTGTTGCTTTGCACCTGGGCGCAAGCAAGCCCGGCA
TATGGCCAACGGCTTATCATCGAGATCGGAAAAGGCCTGCAATTGAGCGGGACTGAAAACGCGGAAAGTCTGTTCGTCGC
GGATCCGACGATCGCTGATATCAAAGAATCCCCCGGCGAAGCCCATTTCATCTACGGCAAGAGCGCAGGCGAGACCACGG
TAACGGGCGTCGATCTTGGCGGAAGAACATTGTTTCAGTACGACATGGTTGTGATCTACAATCTCGATGAGATGCAGCGC
ATGCTCTCGCAACGCTTTCCCGCGGCGCGGATTACGATCCGTTCCGCCAGAGGCAGCGTTTACGCCACGGGCACCGTCCC
AGACCAACAGACATACGATGCAGCGATAGAGAGCCTGGAGAAGAGCATTCCCGAGAGCGTGCTGATCAACGAGATTGCGG
TGGCCGAAAGCCCAATCATAAGGCTCGACATAAAATTCATGGAGGTCTCCCGTGATCGGCTGGAGACCTATGGCGTGAAC
TGGTCGGCATTGTCTCCCAGCAATCACTACAGGACCGGCGACATCCGTGGACGCGGACATGATGTAAATAAATTCATGAA
GTTGCTGCTGGACAACGGCGTGGCGACCATTCTTTCGGACACGACATTGACGACTATCGGCAGAAAAAAAGCGTCGTTCA
TGGCCGGTGAAGAGATCGCGATTCCCACGCATTCCGTTAACAACGGTGCAGCCTCATTTGGCGTCGACTACAAGTTTGTG
GGTTTCAATATTGGTTTCACACCTCAACTGCTGCCCGGCGGTAAGGTCAGTCTGGCCATCGAGGCGGAAATTTCCGAGCC
ACGGCAAACCGTTCAGTTCTCCAGCGGCCCCGTCCCCTACGTTGCTGCGCGGAAGCTGAATACGAATGTGGACCTGCACA
GCGGAGAAAGTTTTATCCTGGCTGGACTGTCGCGGATGGACACCACCGGCGCACACGACCAGCCGCGCCGCAACTGGGGC
GTCGTGGGCGAGGTTCTGCGTTCCTTAGCGGGGCATGGAAGCGTCAGCGCTCACAACCGGGACATTGCAGTGGTGGTCAC
GCCCTATTTCGGTGCATCGGACAAGCCCAGTGCTGCCGATATAACCGGTCTCCAGCGAAGCAATATCGAATTTATACTGT
CCAACAAGAGTAAACCCTTTTCCTCGGCTCGCATCTATGGCCCCGCGGGCTTCCTTTACTAA

Upstream 100 bases:

>100_bases
GCTGATGCAGATATTGTCGCAACAGAACTGGAAGCGCCCGAACCATTTTAGGCTAGGTACGGGCGCCTAGTAGGCTGGAA
ATGAGAAGTTGACCGATTTG

Downstream 100 bases:

>100_bases
AAGTTGTGCCGCAATTCGGGCGGCTTAGAAAAATGAAGTACCTTTTGTCATTGCTTGCTTTTTTGCTTTTAGGCCTGGCC
CAAGCGTCCTTGCTGCCTGC

Product: Flp pilus assembly protein secretin CpaC-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MSQMNCSTLAHKSEHRLRLSEAMMSRLNDLQHPPCVLIDARHCSARAFLYTFRSGALVFFTRLLSLLALLLCTWAQASPA
YGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGETTVTGVDLGGRTLFQYDMVVIYNLDEMQR
MLSQRFPAARITIRSARGSVYATGTVPDQQTYDAAIESLEKSIPESVLINEIAVAESPIIRLDIKFMEVSRDRLETYGVN
WSALSPSNHYRTGDIRGRGHDVNKFMKLLLDNGVATILSDTTLTTIGRKKASFMAGEEIAIPTHSVNNGAASFGVDYKFV
GFNIGFTPQLLPGGKVSLAIEAEISEPRQTVQFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWG
VVGEVLRSLAGHGSVSAHNRDIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSSARIYGPAGFLY

Sequences:

>Translated_473_residues
MSQMNCSTLAHKSEHRLRLSEAMMSRLNDLQHPPCVLIDARHCSARAFLYTFRSGALVFFTRLLSLLALLLCTWAQASPA
YGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGETTVTGVDLGGRTLFQYDMVVIYNLDEMQR
MLSQRFPAARITIRSARGSVYATGTVPDQQTYDAAIESLEKSIPESVLINEIAVAESPIIRLDIKFMEVSRDRLETYGVN
WSALSPSNHYRTGDIRGRGHDVNKFMKLLLDNGVATILSDTTLTTIGRKKASFMAGEEIAIPTHSVNNGAASFGVDYKFV
GFNIGFTPQLLPGGKVSLAIEAEISEPRQTVQFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWG
VVGEVLRSLAGHGSVSAHNRDIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSSARIYGPAGFLY
>Mature_472_residues
SQMNCSTLAHKSEHRLRLSEAMMSRLNDLQHPPCVLIDARHCSARAFLYTFRSGALVFFTRLLSLLALLLCTWAQASPAY
GQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGETTVTGVDLGGRTLFQYDMVVIYNLDEMQRM
LSQRFPAARITIRSARGSVYATGTVPDQQTYDAAIESLEKSIPESVLINEIAVAESPIIRLDIKFMEVSRDRLETYGVNW
SALSPSNHYRTGDIRGRGHDVNKFMKLLLDNGVATILSDTTLTTIGRKKASFMAGEEIAIPTHSVNNGAASFGVDYKFVG
FNIGFTPQLLPGGKVSLAIEAEISEPRQTVQFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWGV
VGEVLRSLAGHGSVSAHNRDIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSSARIYGPAGFLY

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 51556; Mature: 51425

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQMNCSTLAHKSEHRLRLSEAMMSRLNDLQHPPCVLIDARHCSARAFLYTFRSGALVFF
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHH
TRLLSLLALLLCTWAQASPAYGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGE
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCCCEEEEECCCHHHHHCCCCC
AHFIYGKSAGETTVTGVDLGGRTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSV
EEEEEECCCCCEEEEEECCCCCEEEEEEEEEEECHHHHHHHHHHCCCEEEEEEEECCCCE
YATGTVPDQQTYDAAIESLEKSIPESVLINEIAVAESPIIRLDIKFMEVSRDRLETYGVN
EEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHCCCC
WSALSPSNHYRTGDIRGRGHDVNKFMKLLLDNGVATILSDTTLTTIGRKKASFMAGEEIA
EEEECCCCCEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCEEEHHCCCHHHHCCCCEEE
IPTHSVNNGAASFGVDYKFVGFNIGFTPQLLPGGKVSLAIEAEISEPRQTVQFSSGPVPY
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCHHEEECCCCCCE
VAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWGVVGEVLRSLAGHGSVSAHNR
EEEEECCCCEEEECCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
DIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSSARIYGPAGFLY
EEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SQMNCSTLAHKSEHRLRLSEAMMSRLNDLQHPPCVLIDARHCSARAFLYTFRSGALVFF
CCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCHHHHH
TRLLSLLALLLCTWAQASPAYGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGE
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCCCEEEEECCCHHHHHCCCCC
AHFIYGKSAGETTVTGVDLGGRTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSV
EEEEEECCCCCEEEEEECCCCCEEEEEEEEEEECHHHHHHHHHHCCCEEEEEEEECCCCE
YATGTVPDQQTYDAAIESLEKSIPESVLINEIAVAESPIIRLDIKFMEVSRDRLETYGVN
EEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHCCCC
WSALSPSNHYRTGDIRGRGHDVNKFMKLLLDNGVATILSDTTLTTIGRKKASFMAGEEIA
EEEECCCCCEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCEEEHHCCCHHHHCCCCEEE
IPTHSVNNGAASFGVDYKFVGFNIGFTPQLLPGGKVSLAIEAEISEPRQTVQFSSGPVPY
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCHHEEECCCCCCE
VAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWGVVGEVLRSLAGHGSVSAHNR
EEEEECCCCEEEECCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
DIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSSARIYGPAGFLY
EEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]