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The map label for this gene is hrpA1 [H]

Identifier: 110632480

GI number: 110632480

Start: 144949

End: 145494

Strand: Direct

Name: hrpA1 [H]

Synonym: Meso_0118

Alternate gene names: 110632480

Gene position: 144949-145494 (Clockwise)

Preceding gene: 110632479

Following gene: 110632481

Centisome position: 3.29

GC content: 56.04

Gene sequence:

>546_bases
TTGCCCAATGCCGATACGGTTTATGACTATGTCTGCATGGACCAGGAGGTTGGCGAGGCGATCCGGTTTTTCGCGCTCAA
TCTTGGCATAGCGGCCGATATAGCGCCGGGGATCAAGGGGCGGACGGGCGCGAATACGCCGCCGGGTCTGTCCCCTCAGG
CCTATCTCGATCATCTGGCGGCCGAATATCGTTTCGTATGGTATTTCGATGGCACCATACTGCACGTCGCACCATCGAGC
AGCGTTCAGACAGAGGTCTTTTCGTTGCAGAAAAACAATGGCGCTCGTATCATCTCAGCGCTTTCACGAATTGGTCTTTA
TCAGCCGAAGTTCAAGCACGGATTCGATTTAAAGGGCAAGATCCTCATCGTTTCCGGGCCTCCAGCCTATGTCTCGGATG
TGAAGAAGACGGTAGAGGCTCTGGAGAGCGCGGACCGGACTCACATTGCCGTTTTGCGGGGCTCGGTTGAGACGCCGGTT
CTGCATTCCAAGGCCGATATGCCCGCCGAAGGCCAGTTCAGCCCGGGGTTGTCGAAAATACCCTGA

Upstream 100 bases:

>100_bases
AAAAATGAAGTACCTTTTGTCATTGCTTGCTTTTTTGCTTTTAGGCCTGGCCCAAGCGTCCTTGCTGCCTGCGCAGGCAG
CGCTCGGAGGCCCGCCTGGT

Downstream 100 bases:

>100_bases
CAGACCCCATTAGGAAACGAATGAATCTCATAAAGCCCTTGGCCGCAATAGCGCGGCAGAAGGACGTCTTTCTCGTCCTC
GTATTCGCGCTCGTCCTATT

Product: NolW-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MPNADTVYDYVCMDQEVGEAIRFFALNLGIAADIAPGIKGRTGANTPPGLSPQAYLDHLAAEYRFVWYFDGTILHVAPSS
SVQTEVFSLQKNNGARIISALSRIGLYQPKFKHGFDLKGKILIVSGPPAYVSDVKKTVEALESADRTHIAVLRGSVETPV
LHSKADMPAEGQFSPGLSKIP

Sequences:

>Translated_181_residues
MPNADTVYDYVCMDQEVGEAIRFFALNLGIAADIAPGIKGRTGANTPPGLSPQAYLDHLAAEYRFVWYFDGTILHVAPSS
SVQTEVFSLQKNNGARIISALSRIGLYQPKFKHGFDLKGKILIVSGPPAYVSDVKKTVEALESADRTHIAVLRGSVETPV
LHSKADMPAEGQFSPGLSKIP
>Mature_180_residues
PNADTVYDYVCMDQEVGEAIRFFALNLGIAADIAPGIKGRTGANTPPGLSPQAYLDHLAAEYRFVWYFDGTILHVAPSSS
VQTEVFSLQKNNGARIISALSRIGLYQPKFKHGFDLKGKILIVSGPPAYVSDVKKTVEALESADRTHIAVLRGSVETPVL
HSKADMPAEGQFSPGLSKIP

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 19545; Mature: 19413

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNADTVYDYVCMDQEVGEAIRFFALNLGIAADIAPGIKGRTGANTPPGLSPQAYLDHLA
CCCCCCEEHEEECCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
AEYRFVWYFDGTILHVAPSSSVQTEVFSLQKNNGARIISALSRIGLYQPKFKHGFDLKGK
HHEEEEEEECCEEEEECCCCCHHHHEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCE
ILIVSGPPAYVSDVKKTVEALESADRTHIAVLRGSVETPVLHSKADMPAEGQFSPGLSKI
EEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCC
P
C
>Mature Secondary Structure 
PNADTVYDYVCMDQEVGEAIRFFALNLGIAADIAPGIKGRTGANTPPGLSPQAYLDHLA
CCCCCEEHEEECCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
AEYRFVWYFDGTILHVAPSSSVQTEVFSLQKNNGARIISALSRIGLYQPKFKHGFDLKGK
HHEEEEEEECCEEEEECCCCCHHHHEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCE
ILIVSGPPAYVSDVKKTVEALESADRTHIAVLRGSVETPVLHSKADMPAEGQFSPGLSKI
EEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]