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The map label for this gene is rimM [H]

Identifier: 109947826

GI number: 109947826

Start: 1134258

End: 1134800

Strand: Reverse

Name: rimM [H]

Synonym: Hac_1316

Alternate gene names: 109947826

Gene position: 1134800-1134258 (Counterclockwise)

Preceding gene: 109947827

Following gene: 109947825

Centisome position: 73.03

GC content: 37.2

Gene sequence:

>543_bases
ATGCTTTTAGTGGGCAGAATTGGTAAAAGCGTGGGGCTTAATGGGGGCTTAAAGCTTCATTTAGAGAGCGATTTTCCGGA
GTGCTTAAAAAAGGGGGTTAAGGTGAGCGTCGCTCCCTTAAATGCTTTCTCTCACGCTTCGTTTAAAGACTATGTGATCC
ATTCTTATGAACATGCCAAAAACTTGTTGTTTTTAGAAACCATCAACACGCCTGAAATGGCTAGAGAGCTGACTAATTTA
GGGCTTTTTATGAGCGAAACAGAGAGTAAAAAACTTTGTGTTTTAAAAGAAGGGGAGTTTTTTTATTGCGATTTGATAGG
GCTTAGCGTAGTGGAAGAAAACGAGATTCTAGGTAAAGTCATAGAGATCCAAAGGATTTCTCACATAGATTACTTTATGG
TTGAAACTACGCTGAACTTGGTTGAAAAAGGTTTGGCTAAGATTTTTTTAATCCCTTATAGGGATTTTTATATCAAAGAA
ATCCTTTTGCAAGACAAAAAAATTACCACCAACAACGCTAAAACGCTTTTAGAGAATAGTTGA

Upstream 100 bases:

>100_bases
AAAGATGGGTTTTCTTATAGAATCGTTGTTTTTGCTAATAACGATAAAAATAGCGATAAAAATCCCCATGTTTTAGGTGA
TGAAACGCCTTGAATTTTCC

Downstream 100 bases:

>100_bases
GTGAAATTCAGCGTTTTGACTCTCTTTCCGCAACTCGTATGGTCTTATTTTCAAGACTCTATTTTAAAAAGAGCGTTAGA
AAAAAATCTTTTTGCATTAG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSHASFKDYVIHSYEHAKNLLFLETINTPEMARELTNL
GLFMSETESKKLCVLKEGEFFYCDLIGLSVVEENEILGKVIEIQRISHIDYFMVETTLNLVEKGLAKIFLIPYRDFYIKE
ILLQDKKITTNNAKTLLENS

Sequences:

>Translated_180_residues
MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSHASFKDYVIHSYEHAKNLLFLETINTPEMARELTNL
GLFMSETESKKLCVLKEGEFFYCDLIGLSVVEENEILGKVIEIQRISHIDYFMVETTLNLVEKGLAKIFLIPYRDFYIKE
ILLQDKKITTNNAKTLLENS
>Mature_180_residues
MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSHASFKDYVIHSYEHAKNLLFLETINTPEMARELTNL
GLFMSETESKKLCVLKEGEFFYCDLIGLSVVEENEILGKVIEIQRISHIDYFMVETTLNLVEKGLAKIFLIPYRDFYIKE
ILLQDKKITTNNAKTLLENS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20415; Mature: 20415

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSHASFKDYVIHSYEHAK
CEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
NLLFLETINTPEMARELTNLGLFMSETESKKLCVLKEGEFFYCDLIGLSVVEENEILGKV
CEEEEEECCCHHHHHHHHHCCEEEECCCCCEEEEEECCCEEEEEEECCEEECCHHHHHHH
IEIQRISHIDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKITTNNAKTLLENS
HHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHCCCEEECCCCHHHCCCC
>Mature Secondary Structure
MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSHASFKDYVIHSYEHAK
CEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
NLLFLETINTPEMARELTNLGLFMSETESKKLCVLKEGEFFYCDLIGLSVVEENEILGKV
CEEEEEECCCHHHHHHHHHCCEEEECCCCCEEEEEECCCEEEEEEECCEEECCHHHHHHH
IEIQRISHIDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKITTNNAKTLLENS
HHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHCCCEEECCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA